PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006527-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 440aa    MW: 49149.1 Da    PI: 6.8299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006527-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.4e-06275311552
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                      + + Er+RR+riN+++  Lr l+ ka           ++L  A++YI 
  AHYPO_006527-RA 275 NLITERNRRQRINDGILALRALMHKA-----------ATLADAIDYIV 311
                      4568******************9886...........67777777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.9E-1510155IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.89E-11262324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-7268318No hitNo description
Gene3DG3DSA:4.10.280.101.1E-7270325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.032270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-5276319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.92E-5378438No hitNo description
Gene3DG3DSA:3.30.70.2605.3E-5379440No hitNo description
PROSITE profilePS516719.66380440IPR002912ACT domain
CDDcd021160.00238381438No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSQLERALHS LRPLVLESDN WDYFVVWKLG DDPSRFIEWL GCCCNGSKKQ ENGLKKVKKQ  60
KVDSSNQVCR DGSFVHLANT KSCEALAKFP PFLSVFSGLH GEVVISCQPH WLSADSKESC  120
GTHVLIPVFG GLVELYSSKL LERNESIIDY VEALFNIKSE LETMSTSTLT FDGQSINSYV  180
DKSISCISSL NQPNIPTWPQ TMIPLALHSS ETNLDGSSTG SFPLDERPSP DSNPCSAAHQ  240
KPVKLLTANH ENSIIPIDRI DNRRKPEKGQ CKSKNLITER NRRQRINDGI LALRALMHKA  300
ATLADAIDYI VELNNEIKEL KGELKSSSVE DSYRKNTLTL KVSDLDKKIR EPNQANTSLA  360
DGPKLEVLVQ ANKLNTGNFL LKIVCQQRPG VFTKLLQALD YLDLPIEDVN LTTCHGKLSA  420
LFVVQSKKEE IREEDLKESL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682551.10.0PREDICTED: transcription factor bHLH90
TrEMBLA0A0K9RVS10.0A0A0K9RVS1_SPIOL; Uncharacterized protein
STRINGXP_010682551.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.14e-42bHLH family protein