PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006644-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARR-B
Protein Properties Length: 622aa    MW: 70202.3 Da    PI: 5.2444
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006644-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like765e-24191247155
          G2-like   1 kprlrWtpeLHerFveaveqLG..GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r++Wt eLH++Fveav+qLG     k  Pk+il++m+v+ Lt+e+v+SHLQkYRl
  AHYPO_006644-RA 191 KARVVWTVELHQKFVEAVNQLGidSDSKIGPKKILDMMNVPWLTRENVASHLQKYRL 247
                      68*******************633345789**************************8 PP
2Response_reg76.78.2e-26211291109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+ + +++l+++l+k  y ev+++  ++eal+ll++++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ 
  AHYPO_006644-RA  21 VLVVDDDLTWLKILEKMLKKCSY-EVTTCGLASEALKLLRDRKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQH 112
                      89*********************.***************888889**********************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ ++el +
  AHYPO_006644-RA 113 GACDYLLKPIRMKELKN 129
                      *************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.27E-3517141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.9E-4418173No hitNo description
SMARTSM004489.1E-3119131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.20420135IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.1E-2321129IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.26E-2922135No hitNo description
SuperFamilySSF466892.42E-17188251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-27189252IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-20191247IPR006447Myb domain, plants
PfamPF002493.2E-8193246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MVMENGFSSP RSDIFPSGLR VLVVDDDLTW LKILEKMLKK CSYEVTTCGL ASEALKLLRD  60
RKDGFDIVIS DVNMPDMDGF KLLEHVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK  120
PIRMKELKNI WQHVMRKRMQ EVRDIDCFED RNGTDHYDGH CGGDQMSLRK RKDVENKHDE  180
KDSSDSSTTK KARVVWTVEL HQKFVEAVNQ LGIDSDSKIG PKKILDMMNV PWLTRENVAS  240
HLQKYRLYLS RIQKGDKLEN SCGGKKNPDH SYKESSGILG LPNPSFGQVN DISSKYVYRG  300
NQLPIKTVDS IPLDSNPESS KFLPLTEHRV CFSSESSDPQ NARLGLAHTF GSLDMSIKHT  360
SFDSHVATRY PWSGEATDLQ FEPDFKALPT LDTCFNQPVE RILQQQISPD LLDPAPHVSP  420
NLLESAPHIS NDVLEPVLHV KAGRCDTGKV SYLESAPESC SVSNVDAFGR VFDTKNHNFS  480
QRVDDMKETQ PLFERFPTQF EENHLIDTQG FEPSSVGALE MKRQTSVPGS LTAETTEYEL  540
RNQILRCESP STLLGEDLIH RLIQYGDVTS KDFGFDCMGF TGCNFSENDF YNPLPLHRPK  600
LGTEYPIDWA EYPLDQGLLF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17187252163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682390.10.0PREDICTED: two-component response regulator ARR11 isoform X1
SwissprotQ5N6V81e-125ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A0K9QRY80.0A0A0K9QRY8_SPIOL; Two-component response regulator
STRINGXP_010682390.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-123response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]