PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_006651-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 111aa MW: 12661 Da PI: 4.6558

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_006651-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.8	1.7e-07	63	88	7	34
HHHHHHHHHHHHHHHHHHCTSCC.C...T CS HLH 7 erErrRRdriNsafeeLrellPk.askap 34 Er RR+++N++++ Lr ++P+ + AHYPO_006651-RA 63 VSERIRRQKLNDRLFALRAVVPNiT---K 88 67********************966...3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-7	52	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	8.861	56	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.17E-6	59	94	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.3E-6	63	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-5	63	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MESFVDDYHP LYWETDFTTI YHLPTQDFNC LGFEDNLSCY YENDSSSADG NNGSSMASSK 60 NIVSERIRRQ KLNDRLFALR AVVPNITKAD EQDKDNLRIK IQRVISSAQS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019442675.1	2e-21	PREDICTED: transcription factor bHLH35-like
Refseq	XP_019442684.1	2e-21	PREDICTED: transcription factor bHLH35-like
Swissprot	Q2HIV9	3e-15	BH035_ARATH; Transcription factor bHLH35
TrEMBL	A0A4P1RW32	3e-21	A0A4P1RW32_LUPAN; Uncharacterized protein
STRING	XP_007138769.1	2e-19	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	5e-13	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_006651-RA