PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006655-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB
Protein Properties Length: 653aa    MW: 74365.5 Da    PI: 8.7398
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006655-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-07464505240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W+ eE +ll ++ +++++g   +W+ I++++g+gR+ +++
  AHYPO_006655-RA 464 KPWSREEIDLLRKGMQKFPKGtsrRWEVISEYIGTGRSVEEI 505
                      69***********************************99876 PP
2Myb_DNA-binding29.12.4e-09595639345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W+   +  lv+a k ++++   +W++Ia+ ++ g+t +qck ++ 
  AHYPO_006655-RA 595 VWSSVQERALVQALKTFPKEtpqRWERIAAAVP-GKTVNQCKKKFT 639
                      6********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.18E-1995176IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.0E-2195198IPR001623DnaJ domain
SMARTSM002713.8E-1597172IPR001623DnaJ domain
PfamPF002261.7E-1798177IPR001623DnaJ domain
CDDcd062578.58E-1398169IPR001623DnaJ domain
PROSITE profilePS5007619.03498180IPR001623DnaJ domain
PRINTSPR006252.3E-9103121IPR001623DnaJ domain
PRINTSPR006252.3E-9121136IPR001623DnaJ domain
PRINTSPR006252.3E-9152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.237458513IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-4459505IPR009057Homeodomain-like
SMARTSM007175.5E-6462515IPR001005SANT/Myb domain
SuperFamilySSF466892.69E-7464507IPR009057Homeodomain-like
PfamPF002494.1E-6464505IPR001005SANT/Myb domain
CDDcd001672.14E-4465505No hitNo description
PROSITE profilePS512939.497591646IPR017884SANT domain
SMARTSM007174.2E-10592644IPR001005SANT/Myb domain
SuperFamilySSF466894.76E-10594650IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-6595641IPR009057Homeodomain-like
PfamPF002491.6E-7595640IPR001005SANT/Myb domain
CDDcd001677.26E-7596642No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MMAQQVSNVL RISYTQELVD GKPLYVSSNG LPIKESRFEP AGHAFHVAAL RLTGYSEDDS  60
DKDDQSVSSD KEQTYVPSFD SYNGKSKKKS GADGTQQDHY ALLGLAHLRY LATEDQIKKS  120
YRDVALKYHP DKQAALLLAE KSEAAKQVKK EEIENHFKAI QEAYELLIDP QRRRIYDSTD  180
EFDDEIPTDC APQNFFKVFG PAFMRNSRWS VTQPAPLLGD DDTPLDEVDR FYNFWYSFKS  240
WREFPHADEF DLEQAESRDH KRWMERQNAK LSEKARKEEY VRIRTLIDNA YKRDPRIVRR  300
KELEKAEKQR KKQAKFLAKK LQEEEAARAA EEEKRKKEEE ERKAAEAALL NKKAKEKEKK  360
LLRKERSRLR SLTAEVASKH EFDISGDDIE ILCMSLDMER LKNLCEKIEG KDKEEQVKLL  420
KDSLHGQVNS EPGHKAEEKK NSQQTGAVKS NGNMTLNGHE KKEKPWSREE IDLLRKGMQK  480
FPKGTSRRWE VISEYIGTGR SVEEILKATK TVLLQKPDGS KAFDSFLEKR KPAASIVSPI  540
STREDVLGDP TGNGPDACST STAASTNVSS SSISHEESAS ATTNSPDASV SDQDVWSSVQ  600
ERALVQALKT FPKETPQRWE RIAAAVPGKT VNQCKKKFTS IKENFRNKKN AS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A5e-1719429720123Zuotin
5dje_B5e-1719429720123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019104387.10.0PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 2-like
TrEMBLA0A059BI980.0A0A059BI98_EUCGR; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-122DnaJ domain ;Myb-like DNA-binding domain