PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006747-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 353aa    MW: 39098.2 Da    PI: 10.1421
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006747-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.2e-31286343359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  AHYPO_006747-RA 286 DEYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERCLEEPSMLIVTYEGEHNHP 343
                      9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-18237282IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-33274344IPR003657WRKY domain
PROSITE profilePS5081129.884279345IPR003657WRKY domain
SuperFamilySSF1182904.71E-27282344IPR003657WRKY domain
SMARTSM007747.5E-38284344IPR003657WRKY domain
PfamPF031065.6E-27286343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEGVEEANKL AVESCHRVLS IISQPQDQTQ FRNLAVETQQ AVSKFKRVVS LLSNGLGHGR  60
ARITKKNRST PFPQNILLES SNDPKIESCT QPDKALQLLK TNLNESLIQE NGSTTGKSCL  120
SLGGNLSLEM SSGGKTQLQL AQPSLSPHYQ LFQQQKVQLQ QLHQQQRLKQ HAEMLYRRSN  180
SGINLNFDSS SCTPTMSSTR SFISSLSVDG SVANMDGNGF NLFSVSQSSD HSLTQHRKRC  240
SGRGEDGSVK CGSSGRCHCS KKRKHRVKRI IKVPAISNKL ADIPPDEYSW RKYGQKPIKG  300
SPHPRGYYKC SSIRGCPARK HVERCLEEPS MLIVTYEGEH NHPRLPSQSA NT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-202803461075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679182.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-112WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0K9S1G10.0A0A0K9S1G1_SPIOL; Uncharacterized protein
STRINGXP_010679182.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-102WRKY DNA-binding protein 21