PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006754-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 471aa    MW: 52534.9 Da    PI: 8.2687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006754-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-13325371455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  AHYPO_006754-RA 325 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 371
                      799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-4340225IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.14E-14320375No hitNo description
PROSITE profilePS5088817.384321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-19321388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-18325382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10325371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-15327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEDKAMLESV VGVEACEFLI SRIYKEFLNE FRPISSKLNL QQGLSQIVEN SNWNYAIFWQ  60
VVSSKKDGRS VLIWGDGHFR DPKKIVALEG GDSREGNGEI SKKNEAKKRI LKKLHACFVG  120
SEQDDFVAKL DSVSDIEMLY LISMYYWFCL DSSLGPAKCF TSGKPIWVSD GTGCSDHYQS  180
RAYLANSARS QTVVFVPVKD GVLELGSIRM VLEERDLVQM AQLIFGEPRF VQAKVVPRIF  240
GCELSLSGPR PQSNNLDITR KLENGAVFSA ESCVGGSNAS DVRAYGSSSK FGGLEQAKDE  300
VLQASEPKPR KRGRKPANGR EKPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL  360
GDAISYITDL QMKVRMLEAE KGLANPVHKH IAIPEIDFQT RRDDSLVHVS FPLDLHPASR  420
VVKTLLENQI TAPEANVSTT DNTIVHTFTI QTQNGFAENL KEKLQTAFSN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-28319381264Transcription factor MYC2
5gnj_B4e-28319381264Transcription factor MYC2
5gnj_E4e-28319381264Transcription factor MYC2
5gnj_F4e-28319381264Transcription factor MYC2
5gnj_G4e-28319381264Transcription factor MYC2
5gnj_I4e-28319381264Transcription factor MYC2
5gnj_M4e-28319381264Transcription factor MYC2
5gnj_N4e-28319381264Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679205.10.0PREDICTED: transcription factor bHLH3
TrEMBLA0A0K9Q9G30.0A0A0K9Q9G3_SPIOL; Uncharacterized protein
STRINGXP_010679205.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-151bHLH family protein