PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006758-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LBD
Protein Properties Length: 234aa    MW: 25523.2 Da    PI: 6.7231
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006758-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.26.7e-397106199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll +lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+
  AHYPO_006758-RA   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLGHLPVSDRSEAALTISYEAQARLHDPIYGCVSHIFALQQQVVNLQAQ 100
                      7*************************89****************************************************************** PP

           DUF260  94 lallke 99 
                      la+lk+
  AHYPO_006758-RA 101 LAALKQ 106
                      *99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.9696108IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-377105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLGHLPVSD  60
RSEAALTISY EAQARLHDPI YGCVSHIFAL QQQVVNLQAQ LAALKQIQAA QGIYNGNSTQ  120
NPNNERSCSN YPQDVQSWLQ SEYPNMVPPY NPNNFNCSSE SSTIYGSNQS HNNGFSSMVG  180
LQDDQDVSFP GFEGSSHHSA SMAVSLDFSS KLKWPYQDSD DLHSMAFGYP QHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-3631227127LOB family transfactor Ramosa2.1
5ly0_B8e-3631227127LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021770209.11e-130LOB domain-containing protein 29-like
TrEMBLA0A1R3I7B62e-94A0A1R3I7B6_COCAP; Uncharacterized protein
STRINGXP_010679217.11e-125(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.14e-54LBD family protein