PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006776-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 115aa    MW: 12984.2 Da    PI: 9.659
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006776-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.52.5e-211667256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr+++ +g+++AeIrdp+ ng  +r +lg++ taeeAa+a+++a+ +l+g+
  AHYPO_006776-RA 16 KYRGVRRRP-WGKYAAEIRDPKRNG--ARLWLGTYETAEEAARAYDRAAFSLRGH 67
                     7********.**********98776..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-361680IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-241675IPR016177DNA-binding domain
PfamPF008472.1E-151667IPR001471AP2/ERF domain
PROSITE profilePS5103224.8561674IPR001471AP2/ERF domain
CDDcd000184.34E-291676No hitNo description
Gene3DG3DSA:3.30.730.103.6E-321675IPR001471AP2/ERF domain
PRINTSPR003671.6E-111728IPR001471AP2/ERF domain
PRINTSPR003671.6E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MEGYNNNNNN ENSGFKYRGV RRRPWGKYAA EIRDPKRNGA RLWLGTYETA EEAARAYDRA  60
AFSLRGHLAI LNFPNDQHYH SMDGSSNVFG RSCKGNYSSS SSSLSHHEDP QVRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2916761474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021768587.16e-45ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S4AJC23e-37A0A1S4AJC2_TOBAC; ethylene-responsive transcription factor ERF098-like
TrEMBLA0A1U7YVJ33e-37A0A1U7YVJ3_NICSY; ethylene-responsive transcription factor ERF098-like
TrEMBLA0A1U8GIK62e-37A0A1U8GIK6_CAPAN; ethylene-responsive transcription factor ERF098-like
TrEMBLA0A2G2X6302e-37A0A2G2X630_CAPBA; Ethylene-responsive transcription factor
TrEMBLA0A2G3CV662e-37A0A2G3CV66_CAPCH; Ethylene-responsive transcription factor
STRINGXP_010679244.18e-42(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-25ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]