PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006805-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 486aa    MW: 52805.4 Da    PI: 8.022
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006805-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-057597123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C++C+k F r  nL+ H r H
  AHYPO_006805-RA 75 FICEICNKGFQRDQNLQLHRRGH 97
                     89*******************88 PP
2zf-C2H2120.00064152174123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H + +
  AHYPO_006805-RA 152 WKCEKCSKKYAVQSDWKAHSKIC 174
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.62E-67497No hitNo description
Gene3DG3DSA:3.30.160.601.3E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8457597IPR007087Zinc finger, C2H2
PfamPF121715.8E-57597IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0227597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355220117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-4140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.62E-6147172No hitNo description
SMARTSM00355140152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MMKGLGLDES MSNLTSTISG ETSISSNARN DNQSSSTATN VAATANTNTN TMLYTQPSAS  60
SFASTHQSLL ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRAKDQ IIRKKVYVCP  120
EPSCVHHEPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYR  180
CDCGTLFSRA FCDALAEESA RGINPLINFP SSVSSHQTGV SLNTCSTPLS HLTLPPHLSS  240
HHQLLQSLPL KREPNTDQFH NNNNNNNNNN NSNNNNNNNN NNIPPWLACP PPPQQNMVDI  300
GGSHHPLDHH QQSSHLYTFN QYDQNGGVGV GPTLSSFQAP ANPQMSATAL LQKAAEMGVT  360
VSTSCGLTGF IGDDQTEEHN QHQSSMLHDV MLLTSFQSNS VSGGFDSSGF GDFHQAMAAT  420
KAAQGNVGGG GSGGGGGGNE GLTRDFLGLR TFSHKDFLNM AALGHMTSSS PSFPQQHDHQ  480
NQTPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-26148201364Zinc finger protein JACKDAW
5b3h_F6e-26148201364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103114KQRAKDQIIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669389.10.0PREDICTED: protein indeterminate-domain 7
RefseqXP_010669390.10.0PREDICTED: protein indeterminate-domain 7
RefseqXP_010669391.10.0PREDICTED: protein indeterminate-domain 7
TrEMBLA0A0K9RXU80.0A0A0K9RXU8_SPIOL; Uncharacterized protein
STRINGXP_010669389.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.18e-76indeterminate(ID)-domain 7