PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006813-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 361aa    MW: 40687.6 Da    PI: 4.4192
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006813-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.32.8e-34451362102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+++++ed+++++++sws+  nsf+v+d+++f++ +Lpk+Fkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k+ll+
  AHYPO_006813-RA  45 FLIKTFDMVEDPSTDTIVSWSSARNSFIVWDSHKFSTLLLPKFFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLLK 129
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+++
  AHYPO_006813-RA 130 TIKRRRN 136
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3641134IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.18E-3341134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.8E-5841134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-3045134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-184568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-188395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-1896108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MESVIPKEEE ITITYNTGTS SSAGSSSNLS VRPMEGLHEM GPPPFLIKTF DMVEDPSTDT  60
IVSWSSARNS FIVWDSHKFS TLLLPKFFKH SNFSSFIRQL NTYGFRKVDP DRWEFANEGF  120
LGGQKHLLKT IKRRRNVAQN IPNQGSACVE IGHYGLDGEM ERLRRDRNVL IAQLVKLRQQ  180
QQLSRDQIRT MESRLQSTER KQQQMMEFLA KALTNPSFVQ NLMHQTEQGR MFEGIEIGRK  240
RRLTASPSTE LLQDEVLSAV ENTEGLTATV ETEIETLFSA ALDDEASSDV KGPDSILSSI  300
DPNLEIVGEI DWEDLLNDEM VGEEQDLDVP VEDLAPETSN WGEDLQDLID QMGFLGSIPK  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A4e-24431348110Heat shock factor protein 1
5hdn_A4e-24431348110Heat shock factor protein 1
5hdn_B4e-24431348110Heat shock factor protein 1
5hdn_C4e-24431348110Heat shock factor protein 1
5hdn_D4e-24431348110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133LKTIKRR
2161166RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021738979.10.0heat shock factor protein HSF30-like isoform X1
RefseqXP_021738980.10.0heat shock factor protein HSF30-like isoform X1
SwissprotP411521e-136HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A0K9S2581e-180A0A0K9S258_SPIOL; Uncharacterized protein
TrEMBLA0A0K9S3H81e-180A0A0K9S3H8_SPIOL; Uncharacterized protein
STRINGXP_010669379.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-129heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]