PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006832-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 212aa    MW: 23873.2 Da    PI: 5.1014
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006832-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.5e-31150208159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +dDgy+WrKYG+K+vk+s++pr+YYrC+  gCpvkk+ver+++d k+v++tYeg+Hnh+
  AHYPO_006832-RA 150 VDDGYKWRKYGKKMVKNSPNPRNYYRCAADGCPVKKRVERDRDDMKYVITTYEGNHNHQ 208
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-33135210IPR003657WRKY domain
SuperFamilySSF1182906.28E-28143210IPR003657WRKY domain
PROSITE profilePS5081132.237145210IPR003657WRKY domain
SMARTSM007742.1E-35150209IPR003657WRKY domain
PfamPF031062.0E-24151208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MYAVFAAPVN DKMATTTTTN TSLFDFDPSS SSSPFLIQLM EANYSNTQMS SCNVTSFSPL  60
DSSGSDQYFD GNGLEVSDYF SFHDYGNEQQ PMGFEQIQGF GCHGTEFFDV GENSNIQNEG  120
GNTNIGESMR SSKEKKERVA FRMKSEIDVV DDGYKWRKYG KKMVKNSPNP RNYYRCAADG  180
CPVKKRVERD RDDMKYVITT YEGNHNHQSP K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-26138210274WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021738820.19e-76probable WRKY transcription factor 50 isoform X2
TrEMBLA0A0K9R6906e-70A0A0K9R690_SPIOL; Uncharacterized protein
STRINGXP_010669354.11e-71(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.13e-41WRKY DNA-binding protein 50