PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006956-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HB-PHD
Protein Properties Length: 860aa    MW: 94336.8 Da    PI: 4.3524
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006956-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox437.8e-147017431052
                      HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
         Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                      e +++L e F++n+yp++e++e+LA++lgLt ++V  WF N R
  AHYPO_006956-RA 701 EVTKRLYESFKENQYPDRETKEKLASELGLTAKRVDKWFGNAR 743
                      78999************************************99 PP
2PHD43.28.8e-15363418151
                      SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
              PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                      +C+ Cg+    ++++++lCdg C++ fH++Cl+++l see+p g   wlC+ C++k
  AHYPO_006956-RA 363 FCAKCGSkdLSADNDILLCDGiCERGFHQYCLNPPLPSEEIPPGdeGWLCPACDCK 418
                      699***977677********88********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.75E-14353421IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.3E-14360418IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.065361418IPR019787Zinc finger, PHD-finger
CDDcd155049.68E-27363415No hitNo description
SMARTSM002491.7E-10363416IPR001965Zinc finger, PHD-type
PfamPF006283.7E-12363418IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590364415IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.606.6E-14677743IPR009057Homeodomain-like
PROSITE profilePS5007113.021689749IPR001356Homeobox domain
CDDcd000864.86E-13689743No hitNo description
SuperFamilySSF466895.56E-12691747IPR009057Homeodomain-like
SMARTSM003896.0E-11691753IPR001356Homeobox domain
PfamPF000462.5E-11700743IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    Send to blast
MEFQNTTVLH ENQLFENDIG SIDNLTNKAE SRNDVITDGM PLDRVDISLR FEHGSENQGE  60
SVAVCVTCEQ PGLEEFVASE AVPDNGKVEE NVESRNDAGD SSRMEYEQIS PVEQVAILHN  120
DMLKNCGKSE ENECGDVSRM EGAQISLDEL VEKLHGDVLK KVEENGCGAC DAKPSSIDQS  180
TPPLSPNADE KMHVVVLGLG VLDGSEKIRR GRKPKSATKN TQLQTSNRSL RSRSKEISKD  240
PEPSVNLETM KGRTERRGRK KGAVKDGKSN DEFSKMRQHL RYLLHRMKYA QNLLDAYSSE  300
GWRGQSLEKL RPEQELERAR SDINRHKLKI RDLFQQLESM LSEGKFPESL YDSDGLIDSE  360
DIFCAKCGSK DLSADNDILL CDGICERGFH QYCLNPPLPS EEIPPGDEGW LCPACDCKAD  420
CIDLINDSHG IKLAIEDNWE KVFPEAVATE NGKGLDDIMG LPSDDSEDDE YNPDGLDDDA  480
NGEENESSSD ESDSNDSDSS DFSSASEDLG AFQGAEKNLE LPSDDSEDDD FDPDAANVNE  540
DGAEHESSSS DFTSASEDLG TAIGDDGTSG KDESSVPLEL EQDFAESSPI TAKRCVEKLD  600
YKKLYDETYG NDASDSSDDE EWTNTAATCK RKSRAENTIV LGVSTTAGTD SLGNPRKRGR  660
PKANPQVANG TQVQLQDSSP KTSSAGSSRM KRTEYNKLGG EVTKRLYESF KENQYPDRET  720
KEKLASELGL TAKRVDKWFG NARWSFNHHP SRVEANINRV VSSSNTSQSH SVALDGVDSA  780
LTGDRAVVPE SGTAETCIMD GIKPQKLIPR KSNKNSEGDQ SVLETSGAEN TKEGTQANPQ  840
QEPEIPQGRV QSKRRKSGA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733503.10.0homeobox protein HAT3.1-like
RefseqXP_021733504.10.0homeobox protein HAT3.1-like
TrEMBLA0A0K9QSK50.0A0A0K9QSK5_SPIOL; Uncharacterized protein
STRINGXP_010678968.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.13e-86Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain