PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006980-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family E2F/DP
Protein Properties Length: 375aa    MW: 40856.6 Da    PI: 8.7286
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006980-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP62.36.9e-2093162371
          E2F_TDP   3 eksLrlltqkflkllekseegivtlnevakeLvse......dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++Lr++++k     e ++e + ++ +++++L  +      d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  AHYPO_006980-RA  93 GRGLRQFSMK---APEVADELVAEYADASNALG-PneqpgyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 162
                      6778888888...66666667777888888883.369****************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.0E-1061374IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.3E-2888167IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.6E-1991162IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-1594162IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.72E-1398163IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.09E-44167270IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.22E-41168273No hitNo description
SMARTSM011381.3E-62169337IPR014889Transcription factor DP, C-terminal
PfamPF087815.0E-40170301IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MVTGTSLEDG ERNPKGVTRS WGPAVSGQSV STSGSMGSPS SRSEAGMATP ARDNTALRLS  60
HLEIHGDDSA SQGAVVSKKK KRGQRATGAD KSGRGLRQFS MKAPEVADEL VAEYADASNA  120
LGPNEQPGYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW KGLPRTSLND IEELKTERLG  180
LRNRIEKKAA YLRELEEQSV GYQNLIHRNQ QLYGNGNVPT GGVALPFILV QTRPNATVEV  240
EISEDMQLVH FDFNSTPFEL HDDNYVLKQM RFCGKPPNDG GACSTPGSQG EGISIASTYN  300
PQISEPSSPK LHHNQISQPS SPPKLYQPQN CTSPSSSNTY QSQMPFPSRS NTTIKTPSSP  360
PLPGILKARV QHER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-2385167193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733541.10.0transcription factor-like protein DPB
RefseqXP_021733542.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-134DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0K9RGC00.0A0A0K9RGC0_SPIOL; Uncharacterized protein
STRINGXP_010678871.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-120Transcription factor DP