PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007084-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 294aa    MW: 32234.3 Da    PI: 6.5623
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007084-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.21.1e-10155175222
                      --SS-EEEEEEE--TT-SS-E CS
             WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                      +Dgy+WrKYGqK vk+s++pr
  AHYPO_007084-RA 155 HDGYRWRKYGQKAVKNSPYPR 175
                      6*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-12153199IPR003657WRKY domain
SMARTSM007746.2E-18154198IPR003657WRKY domain
SuperFamilySSF1182903.79E-15154199IPR003657WRKY domain
PROSITE profilePS5081118.096156199IPR003657WRKY domain
PfamPF031063.8E-7156176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSNEPKNYHN YPYNHLINND NSSLLSLINE DPQAFLDNSN FFNFTNNPNS TTLQNNTNSY  60
NFNEFMHGSC FDNYPKLSPT SSEVLSSVVD GGFGRGGDET PPMAAAKDAA AIRSSEIPDT  120
PNSSISSSST EAGGSDVGSM ARKGHKRQPI CDDKHDGYRW RKYGQKAVKN SPYPRVERSF  180
QDPTTVITTY EGKHNHPVPA TLRGHAAALL PQYTMFAPSS APPASHPNFP LELLAQLGHG  240
GPNIAVAGGA TPFSHFSQQH QHQHQQQHQQ LFNNDDYGLL QDVVPPFLLK QEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-14138200178Probable WRKY transcription factor 4
2lex_A2e-14138200178Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666507.13e-86PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A0J8B5188e-85A0A0J8B518_BETVU; Uncharacterized protein
STRINGXP_010666507.11e-85(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-27WRKY DNA-binding protein 71