PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007097-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 309aa    MW: 34196.3 Da    PI: 8.2979
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007097-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64.1e-3178136259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  AHYPO_007097-RA  78 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 136
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-3172138IPR003657WRKY domain
PROSITE profilePS5081132.92572138IPR003657WRKY domain
SuperFamilySSF1182901.83E-2675138IPR003657WRKY domain
SMARTSM007741.4E-3777137IPR003657WRKY domain
PfamPF031065.4E-2679136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MKVGMGIGIG RGYGMMCNEM MIRNKNGSFG DTSEVGAVQI PSPRNQGMKR RKIQARKVVC  60
IPAPAAANSR QTGEVVPSDL WAWRKYGQKP IKGSPYPRGY YRCSSSKGCS ARKQVERSRT  120
DPNMLVITYT SEHNHPWPTQ RNALAGSTRS SSSNKPPSQK QINNNNLLLN DPNSSKTSSN  180
SPIKQEQRSD SELMTMTMTD DDRASDIGLM TMTMTDDNRA GNTGLMTMTM SGDNRTSDTG  240
LMTMTMSGDS RASDTGLMTM TVRDDDKVQD ELIRINENDE LFNDSYRPLI MAESSTNQDF  300
FADLGEFEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-2554139480Disease resistance protein RRS1
5w3x_D2e-2554139480Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665626.15e-85PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A0J8E0Q51e-83A0A0J8E0Q5_BETVU; Uncharacterized protein
STRINGXP_010665626.12e-84(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-72WRKY DNA-binding protein 35