PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_007234-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Nin-like

Protein Properties

Length: 909aa MW: 100324 Da PI: 6.8171

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_007234-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.3e-28	600	651	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l+++F++++kdAA+++gvc+T+LKriCRq+GIkRWP+Rkik++ AHYPO_007234-RA 600 AEKTITLDVLRQHFAGSLKDAARSIGVCPTTLKRICRQHGIKRWPSRKIKKV 651 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.632	590	671	IPR003035	RWP-RK domain
Pfam	PF02042	4.3E-25	603	651	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.19E-24	801	896	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.9E-22	810	891	No hit	No description
PROSITE profile	PS51745	26.156	811	894	IPR000270	PB1 domain
SMART	SM00666	1.2E-25	811	894	IPR000270	PB1 domain
CDD	cd06407	2.80E-40	813	892	No hit	No description
Pfam	PF00564	1.1E-18	813	893	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 909 aa Download sequence Send to blast
MDDAVFHSNI ALGAPLDSSM ELDYMDELLL EGCWLEAVDG FNFFHQNPSN TSSAFLDSSY 60 LWPMLEVGNE KSSINPSQRN AQQVRETSEL GDNSALVSIS NGPNSGTMDT DTSQFEGSEL 120 NKLLWIKPKV NTTVATVMER LIKALRFIQE SANGKDLLVQ IWVPVNRGGT KILTTVDQPF 180 SVNSSSQQLA SYRNISTSYE FAAEEDSGVS VGLPGRVFLG KVPEWTPDVR FFRVDEYPRV 240 PYAQQCDVRG TLALPVFEQG SRNCLGVLEV VMTTQKINYR PELESVCRAL EAVDLRSCSE 300 IPGPQKSKEV CSSYQVALPE IQEVIKTACN SHGLPLAQTW VSCIQQGKEG CRHSDENLSN 360 CVSTVDSACF VANPCMQDFH EACSEHHLFK GQGVAGKAFM TNQPCFSEDI TRFSKTEYPL 420 SHHARMFGLC AAVAIRLRCI YTGNADFVLE FFLPADCRDP EEQKKMLTSL SIIIQRVCRS 480 LRVVSDQEMV QETSNPSNKV TVISDDSPRK KLLKVENTVS GSSQEESCGT AVVERERNCI 540 IPMLQEHQPR DVLAGKPSSQ HQQYSNLKGS PGCSSMDYSA FGDGSFSTSG KSGEKKRAKA 600 EKTITLDVLR QHFAGSLKDA ARSIGVCPTT LKRICRQHGI KRWPSRKIKK VGHSLQKLQV 660 VIDSVQGASG AFQIGSFYSN FPDLASPNFS NTSPFSTAKQ HDPPQQTNKE LEGTATSKSP 720 SSSCSPSSSS SQCCSSGTQQ QPSIWNGGIT SHVCVLKRAR SEAELQNSSH GAKSIIMRSQ 780 SQISLVDHHN NADIRPPLPK SNGMVVQTGD SWRVKVAYGE EKIRFRMLRS WRFNDLVQEV 840 VNRFHIGDMS GYQLKYLDDD SEWVLLTCDA DLEECVDICR SSQRQTIKLS LQVSHSHSRS 900 SVASNGHL*

Sequence ? help Back to Top

Protein Sequence Length: 909 aa Download sequence Send to blast

MDDAVFHSNI ALGAPLDSSM ELDYMDELLL EGCWLEAVDG FNFFHQNPSN TSSAFLDSSY  60
LWPMLEVGNE KSSINPSQRN AQQVRETSEL GDNSALVSIS NGPNSGTMDT DTSQFEGSEL  120
NKLLWIKPKV NTTVATVMER LIKALRFIQE SANGKDLLVQ IWVPVNRGGT KILTTVDQPF  180
SVNSSSQQLA SYRNISTSYE FAAEEDSGVS VGLPGRVFLG KVPEWTPDVR FFRVDEYPRV  240
PYAQQCDVRG TLALPVFEQG SRNCLGVLEV VMTTQKINYR PELESVCRAL EAVDLRSCSE  300
IPGPQKSKEV CSSYQVALPE IQEVIKTACN SHGLPLAQTW VSCIQQGKEG CRHSDENLSN  360
CVSTVDSACF VANPCMQDFH EACSEHHLFK GQGVAGKAFM TNQPCFSEDI TRFSKTEYPL  420
SHHARMFGLC AAVAIRLRCI YTGNADFVLE FFLPADCRDP EEQKKMLTSL SIIIQRVCRS  480
LRVVSDQEMV QETSNPSNKV TVISDDSPRK KLLKVENTVS GSSQEESCGT AVVERERNCI  540
IPMLQEHQPR DVLAGKPSSQ HQQYSNLKGS PGCSSMDYSA FGDGSFSTSG KSGEKKRAKA  600
EKTITLDVLR QHFAGSLKDA ARSIGVCPTT LKRICRQHGI KRWPSRKIKK VGHSLQKLQV  660
VIDSVQGASG AFQIGSFYSN FPDLASPNFS NTSPFSTAKQ HDPPQQTNKE LEGTATSKSP  720
SSSCSPSSSS SQCCSSGTQQ QPSIWNGGIT SHVCVLKRAR SEAELQNSSH GAKSIIMRSQ  780
SQISLVDHHN NADIRPPLPK SNGMVVQTGD SWRVKVAYGE EKIRFRMLRS WRFNDLVQEV  840
VNRFHIGDMS GYQLKYLDDD SEWVLLTCDA DLEECVDICR SSQRQTIKLS LQVSHSHSRS  900
SVASNGHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692542.1	0.0	PREDICTED: protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A0K9S3Z8	0.0	A0A0K9S3Z8_SPIOL; Uncharacterized protein
STRING	XP_010692542.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_007234-RA