PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_007253-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

YABBY

Protein Properties

Length: 231aa MW: 25438.6 Da PI: 9.4305

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_007253-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	220.1	6.7e-68	17	188	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldes..lkeelleelkveeenlksnvekees.a 92 d+f sseq+Cy+qC+ C+t+lavsvPs+slfk+vtvrCGhC++ll vn + q a + hl+++ + ++ + l+ + + +++ s a AHYPO_007253-RA 17 DHFPSSEQLCYLQCSRCETVLAVSVPSSSLFKTVTVRCGHCAHLLPVNTRSLLQPPANQFHLSHHnyFSPTSHYLLGEMPNPAPNYSVTQPSaA 110 7999****************************************999999988888888876511334433334443333333333333303 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+++++++ +e+pr+p ++rPPekrqrvPsaynrfik+eiqrika+nP+ishreafsaaaknWahfP+ihfgl AHYPO_007253-RA 111 SSYMTATSSRGGGPNELPRPPTTNRPPEKRQRVPSAYNRFIKDEIQRIKAENPNISHREAFSAAAKNWAHFPHIHFGL 188 333333333556789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.8E-66	21	188	IPR006780	YABBY protein
SuperFamily	SSF47095	1.22E-8	132	181	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.0E-5	135	182	IPR009071	High mobility group box domain
CDD	cd01390	9.62E-6	142	178	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSSSIAGSST TTNLSLDHFP SSEQLCYLQC SRCETVLAVS VPSSSLFKTV TVRCGHCAHL 60 LPVNTRSLLQ PPANQFHLSH HNYFSPTSHY LLGEMPNPAP NYSVTQPSAA SSYMTATSSR 120 GGGPNELPRP PTTNRPPEKR QRVPSAYNRF IKDEIQRIKA ENPNISHREA FSAAAKNWAH 180 FPHIHFGLMP DQTVKRTSTM RPHHPQEAGE DVRMRNGFYA AQANVGVSPY *

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269\|PubMed:10323860, ECO:0000269\|PubMed:10331982, ECO:0000269\|PubMed:10457020, ECO:0000269\|PubMed:11812777, ECO:0000269\|PubMed:12417699, ECO:0000269\|PubMed:19837869, ECO:0000269\|PubMed:9878633, ECO:0000269\|Ref.3, ECO:0000269\|Ref.6}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021855930.1	1e-134	axial regulator YABBY 5-like
Swissprot	O22152	2e-74	YAB1_ARATH; Axial regulator YABBY 1
TrEMBL	A0A0K9QY62	1e-132	A0A0K9QY62_SPIOL; Uncharacterized protein
STRING	XP_010676177.1	1e-131	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	5e-75	YABBY family protein

Link Out ? help Back to Top
Phytozome	AHYPO_007253-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lian H,Li X,Liu Z,He Y HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis. J. Exp. Bot., 2013. 64(11): p. 3397-410 [PMID:23918970] Tameshige T, et al. Pattern dynamics in adaxial-abaxial specific gene expression are modulated by a plastid retrograde signal during Arabidopsis thaliana leaf development. PLoS Genet., 2013. 9(7): p. e1003655 [PMID:23935517] Boter M, et al. FILAMENTOUS FLOWER Is a Direct Target of JAZ3 and Modulates Responses to Jasmonate. Plant Cell, 2015. 27(11): p. 3160-74 [PMID:26530088] Douglas SJ,Li B,Kliebenstein DJ,Nambara E,Riggs CD A novel Filamentous Flower mutant suppresses brevipedicellus developmental defects and modulates glucosinolate and auxin levels. PLoS ONE, 2017. 12(5): p. e0177045 [PMID:28493925] Tanaka W,Toriba T,Hirano HY Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice. New Phytol., 2017. 215(2): p. 825-839 [PMID:28556940] Silverblatt-Buser EW,Frick MA,Rabeler C,Kaplinsky NJ Genetic Interactions Between BOB1 and Multiple 26S Proteasome Subunits Suggest a Role for Proteostasis in Regulating Arabidopsis Development. G3 (Bethesda), 2018. 8(4): p. 1379-1390 [PMID:29487187]