PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_007297-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Trihelix

Protein Properties

Length: 271aa MW: 31718.4 Da PI: 6.5864

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_007297-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.4	9.4e-24	28	109	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +qe+ +Li++r ++e++++++k+ k+lWe v++ +r++gf r+p qCk+kw+nl +ryk ++++ ++ ++cpyf++l+ AHYPO_007297-RA 28 QWGHQETVELIKIRGQLEKNFSSSKRFKALWETVASSLRDKGFFRTPHQCKSKWKNLVNRYKGKETSDFEN----GKQCPYFEELR 109 7************************************************************99999974....568****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.2E-5	20	87	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.747	21	85	IPR017877	Myb-like domain
Pfam	PF13837	1.3E-20	28	110	No hit	No description
CDD	cd12203	3.77E-21	28	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MNPPTIPSEL ATTSSGTETL YPSNNTTQWG HQETVELIKI RGQLEKNFSS SKRFKALWET 60 VASSLRDKGF FRTPHQCKSK WKNLVNRYKG KETSDFENGK QCPYFEELRA VFTDRAESLQ 120 QSFMDSQQVA VKSRKRSGAQ FSDDLSQDDD EEGDDSIREG GLRNNSQKRK TDKNSRGSSS 180 ILEMLRGFLQ QQERVELQWM ESMERNQRER ELFELEWRQS MEKLERERLM MEQAWMEREE 240 QRLIREEIRA EKRDALLTSL LNKLIGQGNV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010677518.1	1e-115	PREDICTED: trihelix transcription factor GT-3b
TrEMBL	A0A371F1K1	6e-94	A0A371F1K1_MUCPR; Trihelix transcription factor GT-3b (Fragment)
STRING	XP_010677518.1	1e-115	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	7e-29	Trihelix family protein

Link Out ? help Back to Top
Phytozome	AHYPO_007297-RA