PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_007339-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

BBR-BPC

Protein Properties

Length: 233aa MW: 25478.8 Da PI: 10.2663

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_007339-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	229.1	3.5e-70	59	232	123	301
GAGA_bind 123 avelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCt 216 +++++e+ ++ + p + + +k+ k +kk+++ p+e++ k kk ++++ k+ ++ +++k+ +k++ + + D + P+P+C+Ct AHYPO_007339-RA 59 CMPINETANNVVDPEPTLSNPTKKPKISKKTSNDGAPLESTPKVKKG-RPAKAKSDAS----PSAKKGRKTLHIRRYDPNTDACGNPAPICTCT 147 33444444444444445555555556666666666666666554444.3333333333....4579999***99999*********** PP GAGA_bind 217 GalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 G++rqCY+WG+GGWqSaCCtt++S yPLP+st+r+g+R+agrKmS+ga+ klL++L+aeGyd+ p+DLkdhWAkHGtnkfvti+ AHYPO_007339-RA 148 GTSRQCYRWGSGGWQSACCTTNVSEYPLPMSTTRPGSRLAGRKMSHGAYDKLLQRLTAEGYDFTLPIDLKDHWAKHGTNKFVTIK 232 **********************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	9.5E-62	1	232	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.0E-64	64	232	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MGSYRSNYSM IPESNTTRSG PHFSWFNPSS YLAATRNIIN PFQGTQNNPE GLATIPIRCM 60 PINETANNVV DPEPTLSNPT KKPKISKKTS NDGAPLESTP KVKKGRPAKA KSDASPSAKK 120 GRKTLHIRRY DPNTDACGNP APICTCTGTS RQCYRWGSGG WQSACCTTNV SEYPLPMSTT 180 RPGSRLAGRK MSHGAYDKLL QRLTAEGYDF TLPIDLKDHW AKHGTNKFVT IK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010677416.1	1e-114	PREDICTED: protein BASIC PENTACYSTEINE7
Swissprot	O82286	1e-52	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	A0A0K9RZC6	1e-101	A0A0K9RZC6_SPIOL; Uncharacterized protein
STRING	XP_010677416.1	1e-113	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	2e-52	basic pentacysteine 7

Link Out ? help Back to Top
Phytozome	AHYPO_007339-RA