PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_007427-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 186aa MW: 21003.7 Da PI: 6.9221

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_007427-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.4e-10	2	46	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er+RR+++N+ ++ Lr+l+P++ + + a+i+ A++++k+L AHYPO_007427-RA 2 THIAVERNRRKQMNEYLNMLRDLMPHS---Y---GDQASIVGAAINFVKEL 46 8*************************7...3...57888999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.423	1	46	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-12	1	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.29E-9	1	51	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.4E-12	2	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-7	2	46	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-8	4	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MTHIAVERNR RKQMNEYLNM LRDLMPHSYG DQASIVGAAI NFVKELEHNL QNLSANKQMK 60 ENINTKSTLL PFQDFFSFPQ FSSSNAQIIN DDPMMSGDAA MSHHHNNHRE QPSNGGLSGA 120 DVEVSMVETH AHLKIRLRRS LKHLSKLVSG LHCLRLVEDE SKLSSVDEIA RAVYELLGRI 180 QEENN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021772989.1	1e-74	transcription factor bHLH94-like
TrEMBL	A0A0J8BBG7	2e-67	A0A0J8BBG7_BETVU; Uncharacterized protein
STRING	XP_010694628.1	3e-68	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	4e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_007427-RA