PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_007493-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Nin-like

Protein Properties

Length: 958aa MW: 105248 Da PI: 5.2099

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_007493-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	25.2	3.3e-08	611	647	1	32
RWP-RK 1 aekeisledlskyFslpikdAAkeLg.....vclTvL 32 aek+isle+l++yF++++kdAAk+Lg +lT+L AHYPO_007493-RA 611 AEKQISLEVLQQYFAGSLKDAAKSLGgtdgtFSLTTL 647 589**********************977777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54277	5.89E-23	857	947	No hit	No description
SMART	SM00666	3.4E-25	862	944	IPR000270	PB1 domain
PROSITE profile	PS51745	25.146	862	944	IPR000270	PB1 domain
Pfam	PF00564	9.2E-19	862	943	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.3E-26	862	943	No hit	No description
CDD	cd06407	1.25E-36	863	943	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 958 aa Download sequence Send to blast
MSEAATTEIE EENHQKSSSL FANYSNNFPR TREFQSGVTQ AQLHHTILGP SSSTFMDLDF 60 GDLDASWSFD QIPTSPVLIS TSDQPFSPLW AFPDDRNPTG IRIPAELSRF TSCNPEPASE 120 NGGNEGGDDD DDDDYKKKVP TQVLGITPID NFDVSFIIKE RMTQALRYFK ESTEQNQILA 180 QIWAPVKSGN NYVLTTSGQP FVLGPHSNGL NQYRTVSLMY MFSVDGESVT TLGLPGRVFR 240 QKLPEWTPNV QYYSSKEYPR VNHAKHYNVR GTLALPVLEP SGQSCVGVLE LIMTSQKINY 300 APEVDKVCKA LEAVNLKSSK ILDHPNIQIC NEGRQNALAE ILEVLTEVCE TYKLPLAQTW 360 VPCRHRSVLA YGGGLKKSCS SFDGSCMGQV CMSTTDVAFY VVDARMWGFR EACAEHHLQK 420 GQGVAGRSFS SHGLSFCRDI SQFCKIEYPL VHYARLFELT GSFAICLRSK HTGDDDYVLE 480 FFLPPNLTDS SQQLSFLDSI LSTMKPDLQN LMVASGRTLE EERKHMEIIE VSSDENLDLQ 540 VESNLSTRPL PVVETINGVL PFVKNSPPQL VEPDARLAGK SVSGAGGIRN GISLTDNKEP 600 KKASERKRGK AEKQISLEVL QQYFAGSLKD AAKSLGGTDG TFSLTTLAQP TIPVPVGSIT 660 WPAGANGTCQ QQSPTYVPVD LPDERSEMPQ LRQRVDGRTS GRVSSHEERI HEQNGFASKA 720 SGSREVSAGT STSHGSCHGS PGTESTPQNG HFVPNFHEQH GHSTGLICTQ NGELRLSAGY 780 SMPDALLAAH HPQEAFGGML LEDAGSSKDL RNLCPSAAEA NIDETIPEHG WINQPCPNPS 840 PRVAMSAAGM MPRFSARQDM KTITIKATFR EDIIRFRFSL SSNIVELKEE VAKRFKLEVG 900 TFEIKYLDDD HEWVLIACDS DLQECLDISK SSGSNMIRLL IQDILGNLGS SCESSGE*

Sequence ? help Back to Top

Protein Sequence Length: 958 aa Download sequence Send to blast

MSEAATTEIE EENHQKSSSL FANYSNNFPR TREFQSGVTQ AQLHHTILGP SSSTFMDLDF  60
GDLDASWSFD QIPTSPVLIS TSDQPFSPLW AFPDDRNPTG IRIPAELSRF TSCNPEPASE  120
NGGNEGGDDD DDDDYKKKVP TQVLGITPID NFDVSFIIKE RMTQALRYFK ESTEQNQILA  180
QIWAPVKSGN NYVLTTSGQP FVLGPHSNGL NQYRTVSLMY MFSVDGESVT TLGLPGRVFR  240
QKLPEWTPNV QYYSSKEYPR VNHAKHYNVR GTLALPVLEP SGQSCVGVLE LIMTSQKINY  300
APEVDKVCKA LEAVNLKSSK ILDHPNIQIC NEGRQNALAE ILEVLTEVCE TYKLPLAQTW  360
VPCRHRSVLA YGGGLKKSCS SFDGSCMGQV CMSTTDVAFY VVDARMWGFR EACAEHHLQK  420
GQGVAGRSFS SHGLSFCRDI SQFCKIEYPL VHYARLFELT GSFAICLRSK HTGDDDYVLE  480
FFLPPNLTDS SQQLSFLDSI LSTMKPDLQN LMVASGRTLE EERKHMEIIE VSSDENLDLQ  540
VESNLSTRPL PVVETINGVL PFVKNSPPQL VEPDARLAGK SVSGAGGIRN GISLTDNKEP  600
KKASERKRGK AEKQISLEVL QQYFAGSLKD AAKSLGGTDG TFSLTTLAQP TIPVPVGSIT  660
WPAGANGTCQ QQSPTYVPVD LPDERSEMPQ LRQRVDGRTS GRVSSHEERI HEQNGFASKA  720
SGSREVSAGT STSHGSCHGS PGTESTPQNG HFVPNFHEQH GHSTGLICTQ NGELRLSAGY  780
SMPDALLAAH HPQEAFGGML LEDAGSSKDL RNLCPSAAEA NIDETIPEHG WINQPCPNPS  840
PRVAMSAAGM MPRFSARQDM KTITIKATFR EDIIRFRFSL SSNIVELKEE VAKRFKLEVG  900
TFEIKYLDDD HEWVLIACDS DLQECLDISK SSGSNMIRLL IQDILGNLGS SCESSGE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695590.1	0.0	PREDICTED: protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A0J8BC07	0.0	A0A0J8BC07_BETVU; Uncharacterized protein
STRING	XP_010695590.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	AHYPO_007493-RA

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]