PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_007516-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 344aa MW: 37716.3 Da PI: 7.9327

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_007516-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.7e-39	53	111	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ AHYPO_007516-RA 53 KDHAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKR 111 68899****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	46	111	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-33	55	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.938	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MDTAQWPQEI IVKPMEEMIP NTCSSSVTTT PNNNNPNSKP NSTSLERKIR PQKDHAVNCP 60 RCNSTNTKFC YYNNYSLTQP RYFCKTCRRY WTEGGSLRNI PVGGGSRKNK RPLSSSSSSS 120 SLGVKKLSSH DLITPTQSNL LSQNPKIHPH HNQGQDLNLG FSPNHHNQEF RSLSEFMQLP 180 NIETTHKGQI PNSGVGTNTN GATHHMSALE LLNGLTSSRG LTPFMPMPVP EHSNGVYSSG 240 FPSLQDYKPS LNFSLVDGLG NGYGSLQGEV HHQGGDQTNN GRILFPFEDL KQVSSTNTSA 300 DHNTKNSNDN NNDNNNNHEQ NGEQGDSTTP GYWSGMLGNG GSW*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MDTAQWPQEI IVKPMEEMIP NTCSSSVTTT PNNNNPNSKP NSTSLERKIR PQKDHAVNCP  60
RCNSTNTKFC YYNNYSLTQP RYFCKTCRRY WTEGGSLRNI PVGGGSRKNK RPLSSSSSSS  120
SLGVKKLSSH DLITPTQSNL LSQNPKIHPH HNQGQDLNLG FSPNHHNQEF RSLSEFMQLP  180
NIETTHKGQI PNSGVGTNTN GATHHMSALE LLNGLTSSRG LTPFMPMPVP EHSNGVYSSG  240
FPSLQDYKPS LNFSLVDGLG NGYGSLQGEV HHQGGDQTNN GRILFPFEDL KQVSSTNTSA  300
DHNTKNSNDN NNDNNNNHEQ NGEQGDSTTP GYWSGMLGNG GSW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010676854.1	1e-136	PREDICTED: dof zinc finger protein DOF4.6
TrEMBL	A0A0K9QRP8	1e-118	A0A0K9QRP8_SPIOL; Uncharacterized protein
STRING	XP_010676854.1	1e-135	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-64	Dof family protein

Link Out ? help Back to Top
Phytozome	AHYPO_007516-RA