PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007545-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRF
Protein Properties Length: 412aa    MW: 44954.9 Da    PI: 7.0431
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007545-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC695.8e-22120165145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgr.srsrkskee 45 
                      d+ep+rCrRtDGKkWRCsr++ + +k+CErH h+gr srsrk++e+
  AHYPO_007545-RA 120 DPEPWRCRRTDGKKWRCSRNAAPEQKYCERHSHKGRpSRSRKPVES 165
                      79*********************************95677777765 PP
2QLQ44.64.4e-1675108336
              QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                      FTa Q q+L++Q ++y+y+++++PvPpeLl +++
  AHYPO_007545-RA  75 FTAGQRQELERQKMIYRYMMSSMPVPPELLIQLS 108
                      ******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.0E-773109IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.4574109IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.9E-1175107IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.617120165IPR014977WRC domain
PfamPF088796.7E-18121162IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MASGYGNWEM DNCDVGLGLK IPWQEQQTPQ QNLSFSWLHN RQNYTENSNN RSSSPTISGF  60
SQSSRFGIDG GRLTFTAGQR QELERQKMIY RYMMSSMPVP PELLIQLSKF PSISTTTGGD  120
PEPWRCRRTD GKKWRCSRNA APEQKYCERH SHKGRPSRSR KPVESSSSSC ASSSSLLSSV  180
SPLSSTTNPV SASSSSCNPI IFTPFSIPKP SSSFDLPSPH QFNPLPRYPD WFLKKEVAPT  240
AATPTDAPVS ACLYTPQITA GEPNTDTNHQ SCFLSRPFID AWSLDNHVDP KDDIIDKCPP  300
PTSSLNSILP LTLSVSAGLE LDQQHHHHEP EDPTKDLPEI RLSSSSSNHQ PLSWMSPWVS  360
SSPGGPLAEA LCLGMGGTGN GAMGSHSEDH LVSPHGNSTN SSTTTHKANM S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021767934.11e-150growth-regulating factor 2-like
TrEMBLA0A0K9RZ301e-127A0A0K9RZ30_SPIOL; Uncharacterized protein
STRINGXP_010676918.11e-146(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.15e-24growth-regulating factor 7