PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007548-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 261aa    MW: 30067.2 Da    PI: 4.7398
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007548-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.35.5e-181181169
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekew.yfFskrdkkya 69
                     +ppGfrFhPt+eel+++yLkkk++ ++++l +vi+++d++k+ePwd++ +++++ +e++w    + r+k+y+
  AHYPO_007548-RA 11 VPPGFRFHPTEEELLQYYLKKKISFQEIDL-DVIRDIDLNKLEPWDIQdNSTSTtSEDSWvICRVFRKKNYQ 81
                     69****************************.9***************9543333144466433333344443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-16869IPR003441NAC domain
PROSITE profilePS5100514.98711160IPR003441NAC domain
PfamPF023657.6E-81273IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MNLSVNGQSK VPPGFRFHPT EEELLQYYLK KKISFQEIDL DVIRDIDLNK LEPWDIQDNS  60
TSTTSEDSWV ICRVFRKKNY QKTIDESPPN IPTPTTTTTT TTDQTQNQLL DLSSKKVLDQ  120
IFSCMGKATN DQDHQMINHD HPTTTCTGNT HYISTYTIPQ NIPNIHQKTL IIHDNHINTT  180
LLQPTNNHHH YNNNLPMLTS SSPTDQFHHD PIINMMSYED DDDDDYYDGK QRLSDWMTLD  240
RLIASQLNGQ DQDLCFSPDL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-29NAC family protein