PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007595-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 689aa    MW: 76177.1 Da    PI: 6.6903
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007595-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix956.9e-3064148187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+laL+++r +m+  +r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++k+g+ +++  + +t+++fdqlea
  AHYPO_007595-RA  64 RWPRQETLALLKIRFDMDGVFRDSSLKGPLWEEVSRKMAELGYHRSAKKCKEKFENVYKYHKRTKDGRVGKS--DGKTYRFFDQLEA 148
                      8********************************************************************964..5557*******85 PP
2trihelix106.51.8e-33500585187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r++++++++++  k+plWee+s++m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  AHYPO_007595-RA 500 RWPKAEVQALINLRTSLDQKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 585
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.57457121IPR017877Myb-like domain
SMARTSM007170.03361123IPR001005SANT/Myb domain
CDDcd122035.04E-2663128No hitNo description
PfamPF138372.2E-1963149No hitNo description
PROSITE profilePS500907.468493557IPR017877Myb-like domain
SMARTSM007173.2E-4497559IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-4498556IPR009057Homeodomain-like
PfamPF138372.6E-23499586No hitNo description
SuperFamilySSF466897.89E-5499595IPR009057Homeodomain-like
CDDcd122031.99E-30499564No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MLGTSNTLLG SSGDDGGGGG GSGSGGKGEV SGVGPTTMTA MGDEDKGISG ADLFEGDRST  60
GGNRWPRQET LALLKIRFDM DGVFRDSSLK GPLWEEVSRK MAELGYHRSA KKCKEKFENV  120
YKYHKRTKDG RVGKSDGKTY RFFDQLEALE QHHLSLPPPL PQQSGPHVTP RAAAQISQAP  180
PQAAVPVTMV IPAGTNPANI TVTVPSSPHH NIPISVGSIN PSQQQMNLVQ QQQNPAMAAI  240
PTHSSIQMEN ASSPSATQSS SSSTSSDEEL LGRRKRKRKW KDFFERLMKE VIDKQEELQK  300
KFLEAVEKRE HDRAAREEGW KMQEMARLNR EHDILVQERS MAAAKDAALI AFLQKLSDQQ  360
QIPLPVPIQT QTQTQTHTQP ESQSQSQSQP QIRVAVPAVA PPITPTQPQS VSLSPQPLQQ  420
IMPQPPPAPQ PQPPQPQPQH KIQAQEIPVT LPSPTQPQPL NQLQQQAMVV VEKMNNNGDN  480
VELQKGNNGD KDNLQASSSR WPKAEVQALI NLRTSLDQKY QENGPKGPLW EEISSAMKKL  540
GYNRNAKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLDALYRER NKMEINSPNP  600
VSVPMAISYG QQQMKNNEAP IMAEPEQQWP PIHHGDQTME EQGSDTEDDG DDEEDDDQGN  660
GYEIVANNIV NAGSMNTPTT ASRTATAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272277RRKRKR
2272278RRKRKRK
3273278RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848795.10.0trihelix transcription factor GTL1
SwissprotQ391175e-81TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0K9RCU70.0A0A0K9RCU7_SPIOL; Uncharacterized protein
STRINGSolyc12g056510.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-77Trihelix family protein