PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007596-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 363aa    MW: 41166.7 Da    PI: 9.6638
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007596-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.72.5e-13280337359
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevakl 59 
                      + +r+rr++kNRe+A rsR+RK+a++ eLe  + +Le+eN++L ++++e+ k+  ++l
  AHYPO_007596-RA 280 AQQRQRRMIKNRESAARSRERKQAYQVELEALALKLEEENEQLqREKAERTKQRFKQL 337
                      679****************************************556788888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.8E-12277339No hitNo description
SMARTSM003381.4E-9278340IPR004827Basic-leucine zipper domain
PfamPF001702.1E-11280337IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.795280332IPR004827Basic-leucine zipper domain
CDDcd147071.59E-16282328No hitNo description
SuperFamilySSF579593.16E-8282332No hitNo description
PROSITE patternPS000360285300IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MTNKFQQRLI LDRLLPSFPF TFKPSIIQIP NFKISQKFQP TIPRIASSKV MPVTSNSTKS  60
DLKSLSSHNY HNHHLNHPSP ASQMISDFTT TTSDLQERMN VERIMRDSTL FNHTNNPVPD  120
SVTNTANFLD TEISLIDAAG AVSAIETEEY LTRRQKTVED VWSEIVAGKN DRKDCKVEPT  180
DVLMTLEEFL DNARVGNEEV YNQDVKVDVS EEIKMSGGVG FHQHPLAQYP FPPQPQPQPG  240
PISMGGLMGY GSGSGGMEVL GSVRGKRRGA PILETLDKAA QQRQRRMIKN RESAARSRER  300
KQAYQVELEA LALKLEEENE QLQREKAERT KQRFKQLMER VVPIVEKRRP PRVLRSVRSS  360
EW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680820.15e-90PREDICTED: G-box-binding factor 4-like
STRINGXP_010680820.12e-89(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.16e-26bZIP family protein