PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007612-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 412aa    MW: 44431.6 Da    PI: 5.4628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007612-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20202251255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  AHYPO_007612-RA 202 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 251
                      7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-37202265IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-22202259IPR016177DNA-binding domain
PfamPF008473.5E-14202251IPR001471AP2/ERF domain
CDDcd000186.21E-21202260No hitNo description
Gene3DG3DSA:3.30.730.101.0E-32202260IPR001471AP2/ERF domain
PROSITE profilePS5103225.712202259IPR001471AP2/ERF domain
PRINTSPR003671.1E-11203214IPR001471AP2/ERF domain
PRINTSPR003671.1E-11225241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MCVLSKVANQ RGDQGFSSSG ARRTTNGGDE ERESPVTTME AQQEPVLRTS WETSAMVMAL  60
TDVISGRGGY DFGTLGVDIG GWSDPFSFGG YPAMSPDMWV GQKRGREEMS GGDFADFPFL  120
YGGFSGGAGG AGGEGESSSS ASGVKEELQS PSSVQLPSHS QSSSRASTTT PLTSTDQPPP  180
TTTFPTAPSA QEESQGGERK RRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDTAEAAAR  240
AYDEAALRFR GNRAKLNFPE FVQSVPPPTV RPSPPTAAGI LPAPTPFQPA RPARTINFEP  300
QLQQQINTSN QVRDYWEYSQ LLQNSGDFNF PGLQQILYPS TCQPLMGPPS ISFSSSSGTS  360
NLHYPHIFSA DQTSIFRPPG NSNNNNNNNI NNINNNNWSL NDPYNPPSSS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22201259160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021737732.11e-118ethylene-responsive transcription factor ABR1-like
TrEMBLA0A0K9QNR34e-82A0A0K9QNR3_SPIOL; Uncharacterized protein
STRINGXP_010681129.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.17e-23ethylene response factor 110