PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007690-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 264aa    MW: 29576 Da    PI: 6.9348
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007690-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.11.9e-15198223126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      yktelC+ +++tGtC+yG+ C+FaHg
  AHYPO_007690-RA 198 YKTELCNKWQQTGTCPYGPHCQFAHG 223
                      9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-19193230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-11194229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.436197225IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-10197224IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-12198223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-11231262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-7232261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.831235263IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4235262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDDFYKNNDE FYSNIFSTNY LFSSTSTSPP STPSATAAAS DIAAVAGAGA GLYRARLILE  60
NHLYDELLNR YKLAITRLGE LSRETKALLE ENEWLRLANV DLNRRLNRVF SIPEQHYGGP  120
ATSNSSTSVI DDEDEDEDED DRFSLPKSIS VRSPGYFKLG NSPTNQPPSP SQSVNGTKLK  180
VRKEEKAIEM EVFNQGMYKT ELCNKWQQTG TCPYGPHCQF AHGVSELRPV IRHPRYKTQV  240
CRMVVAGVAC PYGHRCHFRH SLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-20198261467Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021737453.11e-114zinc finger CCCH domain-containing protein 14-like
RefseqXP_021751100.11e-114zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9N39e-60C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0K9R0X43e-91A0A0K9R0X4_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010693523.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.16e-59C3H family protein