PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_007712-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 169aa MW: 19667.5 Da PI: 10.1191

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_007712-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	9.4e-09	67	102	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + ++E++l+++++++lG++ ++ gRt++++k++w+++l AHYPO_007712-RA 67 FAQDEEDLIIKLHALLGNR--------LP-GRTDNEVKNYWNNHL 102 6789***********99.........*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.67E-15	10	98	IPR009057	Homeodomain-like
SMART	SM00717	56	10	60	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.319	12	58	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.1E-18	13	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.334	59	106	IPR017930	Myb domain
SMART	SM00717	3.3E-5	63	104	IPR001005	SANT/Myb domain
CDD	cd00167	5.11E-6	66	102	No hit	No description
Pfam	PF00249	6.2E-7	67	102	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-10	92	119	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MRRPCCNGRN IGGWTMQDDK KLIDYNIKLH GEDSWSSTPK ATLGCCGRRY RQRWTNYLRP 60 EIKVENFAQD EEDLIIKLHA LLGNRLPGRT DNEVKNYWNN HLKKKLIHMG IDPNNHKLIH 120 HHLPQSQTNL SKCKVFSFVR SFDQSKKNIA CCSKKPSKSH ESNANTIIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-20	12	106	8	108	B-MYB
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010693797.1	6e-60	PREDICTED: transcription repressor MYB6-like isoform X2
Refseq	XP_010693801.1	6e-60	PREDICTED: transcription repressor MYB6-like isoform X2
Refseq	XP_019107766.1	6e-60	PREDICTED: transcription repressor MYB6-like isoform X2
Swissprot	Q9S9K9	3e-41	MYB3_ARATH; Transcription factor MYB3
TrEMBL	A0A218XL10	1e-53	A0A218XL10_PUNGR; Uncharacterized protein
STRING	XP_010693797.1	2e-59	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-43	myb domain protein 3

Link Out ? help Back to Top
Phytozome	AHYPO_007712-RA

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]