PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007723-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 289aa    MW: 31902.3 Da    PI: 5.8638
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007723-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.4e-082002391155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  AHYPO_007723-RA 200 NRRERISERLKILQDLVPNG-----SKVDLVTMLEKAIGYVKFLQ 239
                      7******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.081189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-10200246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-11200248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-7200244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.40E-10200243No hitNo description
PfamPF000103.0E-5200239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MALAKDHQTP TCSFYGSMLE GGSSLQFPHI SPYGFDDYNQ KQQQDVDSLE SPNSNKMMNN  60
SQVLSPSPPL SSSSSANSSN NGFVIHHPHT SNYHPHEEAH SLINFKASYE SFMHGNGSLL  120
SFQQDDQATN NSNYPNNDHH SSFPIWEGSS CSSAMSHDHL KLMKNCGSNM RLLEEVNCLQ  180
TSIGGYQDEA NEWLFAEAIN RRERISERLK ILQDLVPNGS KVDLVTMLEK AIGYVKFLQL  240
QVKVLATDEF WPAAGGKAPD ISQVKEAIDA ILSAQRSSER STPCTSTK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693889.11e-128PREDICTED: putative transcription factor bHLH086
TrEMBLA0A2I4EB431e-55A0A2I4EB43_JUGRE; putative transcription factor bHLH086
STRINGXP_010693889.11e-127(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.15e-45RHD SIX-LIKE 1