PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007730-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 183aa    MW: 20653.9 Da    PI: 4.1967
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007730-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-162974148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEdell+++++++G g+Wk+I+++ g  Rt +++k++ +++l
  AHYPO_007730-RA 29 KGLWSEEEDELLYKCIEKYGEGNWKRIPKRAG--RTINDVKNYCNTHL 74
                     678****************************8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.422478IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-162777IPR009057Homeodomain-like
SuperFamilySSF466895.94E-132778IPR009057Homeodomain-like
SMARTSM007173.5E-142876IPR001005SANT/Myb domain
PfamPF002491.1E-142974IPR001005SANT/Myb domain
CDDcd001673.59E-133274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MLQTFVSTLN TMNYSYDVTT SNHAGVVKKG LWSEEEDELL YKCIEKYGEG NWKRIPKRAG  60
RTINDVKNYC NTHLYKKNLS SNEAISTNTN YAVIDSDCTK DSNGLGPNNE GPNESPLMDD  120
LMEEELNNTE WLKNMLAEIK KDENEVAFQL FNGPIIGPIL GQEDPNIDDG MDKWLSILGE  180
EY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1B1RVA03e-95A0A1B1RVA0_AMATR; Transcription factor MYB1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.15e-10myb domain protein 114