PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007738-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GeBP
Protein Properties Length: 428aa    MW: 46360 Da    PI: 8.45
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007738-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573116.31.7e-3666164297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                      lfqrlw++eDei lL G++++++++g+     ++d+ afy+++k++++f+++ksqlveK+rrLKkK+++  ++++sgk+++f+++hdq++fe+s
  AHYPO_007738-RA  66 LFQRLWTDEDEIELLNGFLEYTSSRGTtssGHHHDTAAFYDQIKSKLQFEFNKSQLVEKLRRLKKKYRTVLSRMSSGKDFVFKSPHDQQTFEIS 159
                      79************************97644566************************************************************ PP

           DUF573  93 kkiWg 97 
                      kkiW 
  AHYPO_007738-RA 160 KKIWS 164
                      ****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.9E-3567164IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MMLHLDSHVG AVTIAIPSSS SISVAVPPPV NSSNAVTIAL PDPKREISGF PMVNPEKKPI  60
DDSRRLFQRL WTDEDEIELL NGFLEYTSSR GTTSSGHHHD TAAFYDQIKS KLQFEFNKSQ  120
LVEKLRRLKK KYRTVLSRMS SGKDFVFKSP HDQQTFEISK KIWSHLSTNF RGVAEFDDDD  180
QNPNPNANPS VLASATPPRP PNSSFVISHI NLNSVAAAGN SSSPMMVDHK PGSIGNYSNN  240
ISAVTSNSNV GFDTMMSNLN TPAAKLSSRK RPRVGKIDEK FVKPVSLGGN VVGDGVNGDQ  300
NSNVNNINNN VNNNSSNINL GSTMQGLIEE AVRSCLSPMV KELVNNAVNG VVFGSSGSGI  360
KGVGELALNA VPLSFSGSNV LGGNGGEVMD EKWRKQHILE LEVYSKRLEL VQDQIKLSLE  420
DLRSQGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848789.10.0probable transcription factor At3g04930 isoform X1
TrEMBLA0A0K9S3860.0A0A0K9S386_SPIOL; Uncharacterized protein
STRINGXP_010674885.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-44DNA-binding storekeeper protein-related transcriptional regulator