PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007744-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB
Protein Properties Length: 242aa    MW: 27203 Da    PI: 6.1705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007744-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45e-11654244
                     SSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrw 44
                     g WT  Ed+ + +a   +G +       +W++Ia++++ g++++++++++
  AHYPO_007744-RA  6 GHWTRAEDKVFEEALVTFGEEdnqdpqlRWHKIAARLP-GKSPEEVRNHY 54
                     57************************************.**********9 PP
2Myb_DNA-binding45.91.3e-14116160347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  AHYPO_007744-RA 116 PWTEEEHRLFLIGLEKYGKGDWRSISRNVVVTRTPTQVASHAQKY 160
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.5E-8460IPR001005SANT/Myb domain
PfamPF002492.0E-9655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-7656IPR009057Homeodomain-like
PROSITE profilePS500908.002658IPR017877Myb-like domain
SuperFamilySSF466891.29E-10764IPR009057Homeodomain-like
CDDcd001673.23E-9858No hitNo description
PROSITE profilePS5129420.741109165IPR017930Myb domain
SuperFamilySSF466894.67E-17111166IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-17112164IPR006447Myb domain, plants
SMARTSM007171.0E-11113163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-12113159IPR009057Homeodomain-like
CDDcd001673.30E-10116160No hitNo description
PfamPF002491.5E-12116160IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MIGDLGHWTR AEDKVFEEAL VTFGEEDNQD PQLRWHKIAA RLPGKSPEEV RNHYEALVYD  60
VDQIDSGQVE LPSYSDELAS SWWVAETQST RPSQISFGSD GGKPKNNDAE RKKGTPWTEE  120
EHRLFLIGLE KYGKGDWRSI SRNVVVTRTP TQVASHAQKY YLRQNSVKKE RKRSSIHDIT  180
TVDDKSGARP AVEQNWIPPP QGNSMTQNTT LQQLNAGASP HFGSNTQGVT EFGYPNFGFP  240
M*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856464.11e-127transcription factor DIVARICATA-like
SwissprotQ9FNN62e-57SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0K9Q7821e-126A0A0K9Q782_SPIOL; Uncharacterized protein
STRINGXP_010695074.11e-116(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.18e-71MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]