PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007824-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 272aa    MW: 30970.4 Da    PI: 6.7804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007824-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1966116155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+G+r+++ +g+W+AeIrdp++     r++lg+f t+e+Aa+a+++ ++k++g
  AHYPO_007824-RA  66 TQYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTPEQAARAYDKEARKIRG 116
                      58********.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.86E-3366125No hitNo description
PfamPF008478.0E-1267116IPR001471AP2/ERF domain
SMARTSM003808.3E-3967130IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2267125IPR016177DNA-binding domain
PROSITE profilePS5103223.73667124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3267125IPR001471AP2/ERF domain
PRINTSPR003673.3E-116879IPR001471AP2/ERF domain
PRINTSPR003673.3E-1190106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MCGGAILADI IPRNKGRTIS GFDFWPDAFF STSHNSTKQP FCPPKSQLSI SGNGEEEKRP  60
KKQRKTQYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTP EQAARAYDKE ARKIRGKKAK  120
VNFPNEEQQS INYQPNYSSS SYHHQQTQNF NYPTNFNQIQ SYGSSLNEEK LSGYNSESVY  180
STPNLMGISI TQQIKGENCE EEKKGIVVEE EENEVQKLSE ELMAYENYMK FYEIPYMEGQ  240
SCIIAPPMAS SQEGNATLEL WNFDDLPSTA A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2167124260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-21671261474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862620.11e-115ethylene-responsive transcription factor ERF073-like isoform X1
TrEMBLA0A0K9R9801e-114A0A0K9R980_SPIOL; Uncharacterized protein
STRINGXP_010684330.11e-106(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-37ethylene-responsive element binding protein