PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007965-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 613aa    MW: 68270 Da    PI: 4.232
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007965-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.3e-10462505146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r +W++ + el++++++q+G++  + I + ++ gRt+ q+k+++ k
  AHYPO_007965-RA 462 RAKWSKHDTELFYKGIRQFGSD-LSMIQQLFP-GRTRHQIKLKYKK 505
                      569*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159637.8E-28455540No hitNo description
PROSITE profilePS512939.787460511IPR017884SANT domain
SMARTSM007171.0E-7461509IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-6462505IPR009057Homeodomain-like
SuperFamilySSF466891.57E-9464511IPR009057Homeodomain-like
CDDcd001671.71E-6464505No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MDLDDPFAQP VAKAPTTGRF QPKTKPRPKK GPSIAAKSTT KDVIANESVL LNDLAEKKSY  60
DPKSLSVAEA ESLVIPHEEG NVSTEIEEVS GSAVIKQSNV ALSNPILGKD LGVDLSLKSQ  120
LPPDGISLFT TLAYLPSETL TPDMSCIQIE HEEPVDSNII VADASPLSPY DSHSVSDQSK  180
ILQESDCYKE SNVCGDGDLH LNVDQLETGD LSCLEIVDTT HEDAFASEKS AVEFQPKPKP  240
QSDKQKHPTV AASQLPHDLE PLSEDEHKQS NGSVHAVEHN AIEHNTISDV LHMRDEELSF  300
DCSENRPDTL VSKDTHLAFL EKPLQQASGE NFEERNSHQA FDSYAKSIDV EVVSGFEGNE  360
NGYDIPDGVN EDELDLQRVP IKDLIILAEY REREAKKEAA AAVQPPTNER TDSILSEDPP  420
YDDNEALGFD QDGDGLDNPS TSGIMKDTGY FNYQSFMTKE PRAKWSKHDT ELFYKGIRQF  480
GSDLSMIQQL FPGRTRHQIK LKYKKEERQN PMRLDDALAS RLTDFSHFEL VIERLQEQAA  540
QEAMSDREDS VCPTGNDEEQ PEEGLNINED VTKVEQNKEG EIDDQESDKH YVKSPPKSYY  600
NEEDFDVYNP IM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858349.11e-103uncharacterized protein LOC110797534
STRINGXP_010671339.11e-92(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-32MYB_related family protein