PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008010-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 226aa    MW: 25194.9 Da    PI: 9.7157
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008010-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.3e-15131216598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +ps+v    +l lp +f+++   ++ ++ t+tl de+g+++ v +  rk++    l++GW++F+  ++L +gD+vvF+++++s  ++++ ++r
  AHYPO_008010-RA 131 ILPSHVAGCFWLGLPSDFCRSSL-PS-NDGTVTLVDEEGEEYPVVYLARKTG----LSGGWRGFALGHQLVDGDTVVFQVISHS--TMKIYIIR 216
                      5699999999*********8883.33.3449***************666665....***********************87644..44777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-20122218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-17124218IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-22125216No hitNo description
PROSITE profilePS5086312.083127218IPR003340B3 DNA binding domain
SMARTSM010192.2E-19127218IPR003340B3 DNA binding domain
PfamPF023625.9E-13132216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGSCSYEERR QKRVEENRKR LEDLNLLHLS QSLKNISPKS SPMKKVGKPR IVEKKMVAVR  60
RSSRVAKNPA PAPVYVEVQY PRLSSPRKSY GVVRGNYEVA TEEERAYTIK VAEKLAAKLD  120
EEGFPTLVRP ILPSHVAGCF WLGLPSDFCR SSLPSNDGTV TLVDEEGEEY PVVYLARKTG  180
LSGGWRGFAL GHQLVDGDTV VFQVISHSTM KIYIIRGKGY EAPQD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021729808.11e-131B3 domain-containing protein At5g42700-like
TrEMBLA0A0K9QC351e-123A0A0K9QC35_SPIOL; Uncharacterized protein
STRINGXP_010667517.11e-118(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-59B3 family protein