PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008032-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 267aa    MW: 30375.8 Da    PI: 7.4955
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008032-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-1875137255
              AP2   2 gykGVrwdkkrgrWvAeIrdpse.ng........kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++GVr++  +g+WvAeIr+p + n         kr +r +lg+f ta eAa a+++a+k ++g
  AHYPO_008032-RA  75 TFRGVRQRT-WGKWVAEIREPINcNTtteyneqrKRsRRLWLGTFSTAIEAALAYDEAAKVMYG 137
                      69****999.**********97776578888886448***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.16E-2774146No hitNo description
SMARTSM003805.0E-3275151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2775145IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-1875146IPR016177DNA-binding domain
PROSITE profilePS5103221.66775145IPR001471AP2/ERF domain
PRINTSPR003673.4E-97687IPR001471AP2/ERF domain
PfamPF008472.7E-1376137IPR001471AP2/ERF domain
PRINTSPR003673.4E-9111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDSQLSQRGY MNGRRRRNGY KSVAQILEKW KIHNQQMGNS SSIDEAKKKV QKGPARGSRK  60
GCMPGKGGPE NLDCTFRGVR QRTWGKWVAE IREPINCNTT TEYNEQRKRS RRLWLGTFST  120
AIEAALAYDE AAKVMYGPSA ILNFPIPKQD DCNSNILGPD SHTTTQGFEE EQEKQQLKSS  180
MNLGFDYTQE WMIDPIVDPN FGLKQEEQHD YGFVDDHTLF YSDSWYHTKS SVDGIMSNYK  240
LQPTFSGNLG FDFINSSDGI MSNYQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1676146361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105111QRKRSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021769646.11e-102dehydration-responsive element-binding protein 2A-like
TrEMBLA0A0K9QAX73e-93A0A0K9QAX7_SPIOL; Uncharacterized protein
STRINGXP_010676824.14e-99(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.11e-32ERF family protein