PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_008120-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 440aa MW: 48204.5 Da PI: 6.1153

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_008120-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.7e-40	101	161	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s AHYPO_008120-RA 101 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKSSA 161 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	98	158	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-32	103	159	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	105	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	107	143	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MMDPAFKLFG KTIPVIGDND DESPCCNSND GSNSDQQDVD DNKESAEETM EIDQPSDEDS 60 TDPPTVSKTD DTKQAPDSEK DSEEKESNDQ KNSNQKTLKK PDKILPCPRC NSMDTKFCYY 120 NNYNINQPRH FCKSCQRYWT AGGTMRNVPV GAGRRKNKSS ASRYCHITVS EALQAARLDV 180 PNGVHHPGLK TNGTVLTFGP DNSFCESISP VLNVGDKKVL NGRNGFHNGY KNIDQVDDRS 240 SGSTVTTTSV DDKAKAGVQG QIKHNMNGFS NQMPCFQWPY MWNPAVPLPP FCPSAYPAMP 300 FYPPPPPPYW NGAIPWNYPW VPPVSPSPKS PVSNPNSPTL GKHTRDGEML NQSENERSSG 360 TPTVLVPKTL RIDDPDEAAK SSIWTTLGIK KGDSLSKGGF FSSLSSKKGE EKVHQMDAPP 420 SLTANPAALC RSMNFQESA*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MMDPAFKLFG KTIPVIGDND DESPCCNSND GSNSDQQDVD DNKESAEETM EIDQPSDEDS  60
TDPPTVSKTD DTKQAPDSEK DSEEKESNDQ KNSNQKTLKK PDKILPCPRC NSMDTKFCYY  120
NNYNINQPRH FCKSCQRYWT AGGTMRNVPV GAGRRKNKSS ASRYCHITVS EALQAARLDV  180
PNGVHHPGLK TNGTVLTFGP DNSFCESISP VLNVGDKKVL NGRNGFHNGY KNIDQVDDRS  240
SGSTVTTTSV DDKAKAGVQG QIKHNMNGFS NQMPCFQWPY MWNPAVPLPP FCPSAYPAMP  300
FYPPPPPPYW NGAIPWNYPW VPPVSPSPKS PVSNPNSPTL GKHTRDGEML NQSENERSSG  360
TPTVLVPKTL RIDDPDEAAK SSIWTTLGIK KGDSLSKGGF FSSLSSKKGE EKVHQMDAPP  420
SLTANPAALC RSMNFQESA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021761615.1	0.0	cyclic dof factor 3-like isoform X1
Swissprot	Q8LFV3	1e-106	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A0K9R752	0.0	A0A0K9R752_SPIOL; Uncharacterized protein
STRING	XP_010678503.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	4e-62	cycling DOF factor 1

Link Out ? help Back to Top
Phytozome	AHYPO_008120-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]