PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008158-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family BBR-BPC
Protein Properties Length: 216aa    MW: 23588.8 Da    PI: 10.4769
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008158-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind228.74.8e-7051215134301
        GAGA_bind 134 alpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGn 227
                       +pi+++ +++ + + +  ++ +kkpk++k k++k+  +k+ k   k++ ++++ +e+k+++    + s+D  + P PvC+CtGa rqCY+WG+
  AHYPO_008158-RA  51 CMPINQTINSVVDPEPMP-SEPTKKPKTSK-KSPKDGAPKEPKLGIKKG-RPSKAKERKNLKSRSHESSMDAFGNPSPVCTCTGAARQCYRWGS 141
                      456666665555554444.33344444443.344444444434444444.356778899999999***************************** PP

        GAGA_bind 228 GGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      GGWqS+CCtt+iS yPLP++++r+g+R+agrKmS+ga+ klL +LaaeGyd+  p+DLk+hWAkHGtnkfvti+
  AHYPO_008158-RA 142 GGWQSSCCTTNISEYPLPMNATRPGSRLAGRKMSHGAYDKLLHRLAAEGYDFTVPIDLKNHWAKHGTNKFVTIK 215
                      *************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.2E-6210215IPR010409GAGA-binding transcriptional activator
PfamPF062172.3E-6472215IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MIPEANTSRS GSHFSWFNPS SYLAATRNIF NPFQGTQNNP DGGLAAIPIR CMPINQTINS  60
VVDPEPMPSE PTKKPKTSKK SPKDGAPKEP KLGIKKGRPS KAKERKNLKS RSHESSMDAF  120
GNPSPVCTCT GAARQCYRWG SGGWQSSCCT TNISEYPLPM NATRPGSRLA GRKMSHGAYD  180
KLLHRLAAEG YDFTVPIDLK NHWAKHGTNK FVTIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677416.11e-110PREDICTED: protein BASIC PENTACYSTEINE7
SwissprotO822867e-56BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A0K9RZC61e-101A0A0K9RZC6_SPIOL; Uncharacterized protein
STRINGXP_010677416.11e-110(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.47e-57basic pentacysteine 7