PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008229-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 358aa    MW: 40347.2 Da    PI: 7.0974
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008229-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.2e-08113133526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+ f+r G C++Gd+C FaHg
  AHYPO_008229-RA 113 ACPEFRR-GSCHRGDSCEFAHG 133
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.6346097IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4108134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.859109135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5112135IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6113133IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287143167IPR000571Zinc finger, CCCH-type
SMARTSM003563.4143166IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MMMIHQHHHP TVDIPHWDPL YEDPTTPIFS PQTNPYFSAL NHYLPSSEFD DSDSESSDLP  60
FDSFNCDNFR MYEFKIRKCA RGRSHDWTEC PYAHPGEKAR RRDPRKYHYS GTACPEFRRG  120
SCHRGDSCEF AHGVFECWLH PARYRTRPCK DGSHCKRRVC FFAHSPEQLR ILPSISESPA  180
SPLVCDSVDH LRVLPPLPES PPSLNMKSGV GHNNGYSPTS VFDSFPDSPP LSPSYGLNSV  240
SELGYTLRGL QIGKLGMGPR NVWGVQLSSS SSPRSPRGYM GNLPTTPTRT PTRSGLSLVD  300
PWHINTLEEV PMERVESGKD LRAKIYAKLS KENSLESERV ESVSSVPDLE WVSELVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668905.11e-175PREDICTED: zinc finger CCCH domain-containing protein 23
SwissprotQ9M0G25e-97C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A0K9RVW91e-168A0A0K9RVW9_SPIOL; Uncharacterized protein
STRINGXP_010668905.11e-174(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-78C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]