PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008240-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 634aa    MW: 72879.1 Da    PI: 9.7028
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008240-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.2e-09427469348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       WT+eE el ++  ++lG++ Wk+I+ ++g  + + ++k+ w+ y+
  AHYPO_008240-RA 427 EWTPEEIELVLKSYEKLGSN-WKKISLELG--KNRIHVKDAWRRYK 469
                      7*****************99.********9..78899***999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.048351422IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-8354441IPR009057Homeodomain-like
PROSITE profilePS500904.112354407IPR017877Myb-like domain
PROSITE profilePS5129411.274420473IPR017930Myb domain
SMARTSM007172.1E-6424471IPR001005SANT/Myb domain
SuperFamilySSF466891.73E-9426486IPR009057Homeodomain-like
CDDcd001675.64E-4427469No hitNo description
PfamPF139211.0E-10428486No hitNo description
Gene3DG3DSA:1.10.10.601.5E-9442475IPR009057Homeodomain-like
PROSITE profilePS500907.735470538IPR017877Myb-like domain
SMARTSM007176.7474540IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-6476540IPR009057Homeodomain-like
PROSITE profilePS500906.911540593IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MAMSNEGDAF ISVKKKHKKL KNSKMNSTGV EDDIQIVDEA HSKKKRKTKV VSNISKDVSD  60
VEIGVQMDKS CKKDKKKKDK SRKDVSAQGN DDEIESNIKK SKAGEKGRAS NFSEHAGGNE  120
ESLNLGVNDL GSSRKKRKHS LKNDTENLED KGKELHAREE EYPKKKKKKI KHKDGKSTDD  180
NARDASGGDF NDRCIKRKKK SVESSMNGGV NASALETRDA DLVEHHISDE IIGNDRNVKD  240
KKRKKKNKDD SYEHNSEKSR DRSSSKKKKK KKHSIGSNTV EDLHPAALEN NENSKTVDPS  300
ENSNSSKKSK RVKFSDTVEV FPLPDNSSKG KKRKGEDDIK EKKVADDGLV RGKRFSKEED  360
KMVQDAVYKY IDDHNLGEQG LEMVMKCKSY AKVRDCWKEI AQALPHRPYV SVYCRAHILF  420
ERSDTREWTP EEIELVLKSY EKLGSNWKKI SLELGKNRIH VKDAWRRYKH PDLRSGKWSQ  480
EEYQNLFNLV NMDLAMKAYT EKKTKYGMLR DNISWGAISD RISTRSNALC CMKWYRQLRS  540
PMVDDGLWSD VDDYRMLIVL AELDAFCEED VDWDNLLEHR SGDICRRRWS QMVRHIGEFG  600
TKPFNEQVEI LSQRYCPNLL EAREAYENKV PVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240244KKRKK
2265271KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850159.10.0RNA polymerase I termination factor-like
TrEMBLA0A0K9RAV41e-165A0A0K9RAV4_SPIOL; Uncharacterized protein
STRINGXP_010692728.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-115MYB_related family protein