PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008342-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MIKC_MADS
Protein Properties Length: 165aa    MW: 19143.9 Da    PI: 10.1618
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008342-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.85.1e-32959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  AHYPO_008342-RA  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                     79***********************************************96 PP
2K-box84.32.6e-2881158885
            K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                      s+ ++ +e++++e+ kLk++++ Lqr+qR+llGedL++L+ keL++Le+qL+ksl++iRs K++ ll+q+ +l+k  +
  AHYPO_008342-RA  81 SQPSKGNENSYEEYLKLKAKVDILQRNQRNLLGEDLTELNTKELEHLEHQLDKSLRQIRSIKTQNLLDQLADLRKTVR 158
                      45677899******************************************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.515161IPR002100Transcription factor, MADS-box
CDDcd002653.60E-43278No hitNo description
SuperFamilySSF554558.76E-35284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-333859IPR002100Transcription factor, MADS-box
PfamPF014868.1E-2284158IPR002487Transcription factor, K-box
PROSITE profilePS5129712.49587164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMAKTLERY QRCSYGSLET SQPSKGNENS YEEYLKLKAK VDILQRNQRN LLGEDLTELN  120
TKELEHLEHQ LDKSLRQIRS IKTQNLLDQL ADLRKTVRSP RTFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-2275158188Developmental protein SEPALLATA 3
4ox0_B2e-2275158188Developmental protein SEPALLATA 3
4ox0_C2e-2275158188Developmental protein SEPALLATA 3
4ox0_D2e-2275158188Developmental protein SEPALLATA 3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00092SELEXTransfer from AT5G15800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819322e-49LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132662e-49LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021718364.14e-99MADS-box protein CMB1-like isoform X1
SwissprotQ396854e-96CMB1_DIACA; MADS-box protein CMB1
TrEMBLA0A1U8A7P23e-87A0A1U8A7P2_NELNU; developmental protein SEPALLATA 1
STRINGXP_010681125.15e-98(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-84MIKC_MADS family protein