PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008378-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 483aa    MW: 54307.9 Da    PI: 8.0767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008378-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00161434323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C +C+k F++  +L  Hir+H
  AHYPO_008378-RA 14 CRHCNKKFPSGKSLGGHIRSH 34
                     ********************9 PP
2zf-C2H212.10.0006348368323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C  Cg++F+++  L  Hi +H
  AHYPO_008378-RA 348 CLVCGRTFKTHQALGGHILSH 368
                      99****************998 PP
3zf-C2H214.88.3e-05407429123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kCp+C+++F++   L  H r+H
  AHYPO_008378-RA 407 HKCPYCPRVFKSGQALGGHKRSH 429
                      79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.211234IPR015880Zinc finger, C2H2-like
PfamPF139125.7E-61234IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5361239IPR007087Zinc finger, C2H2
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-8344368No hitNo description
PfamPF121716.9E-5345369IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003553346368IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349346373IPR007087Zinc finger, C2H2
PROSITE patternPS000280348368IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-8402429No hitNo description
SMARTSM003550.011407429IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349407429IPR007087Zinc finger, C2H2
PfamPF139128.7E-11407430IPR007087Zinc finger, C2H2
PROSITE patternPS000280409429IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEEIKDQEEF KHGCRHCNKK FPSGKSLGGH IRSHVMANAK KNKSNPKKVP NFIGFSDDDD  60
DDENDDDEYE DDSDVFGADQ REKDNGYELR ENPKKTWRMV DSSSGKQEQY ERACKQSGKV  120
IHSVKALCGH MGSHTHSDDK ERYFKEEDDH SWSINSKEQL GLAMESHSDN DNSNNFKNQT  180
RSLTRYNSLT GKSSSFHSEI DQYDSDVTAT AHCLIMLSRD SFGWKNYFDS NGEYSGILEG  240
GSSNYVGIID KKKDLNWLNA NNDIKQVAVK DVIKVRNQKI DNSDSGYNEN GDKEDESDDS  300
VDWFVRKNGD KKAKIGFESR VVKDNSFDED DDRKGKNNTT KKGKKYWCLV CGRTFKTHQA  360
LGGHILSHKK NGDNSLDCSN SSKQKEVQAS SSAKNKANRN SKKVKGHKCP YCPRVFKSGQ  420
ALGGHKRSHM MGAGRIKATV KETECLKIKK RARPSPSPSP PPTSPELNQP LIDLNLPALS  480
EE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680727.11e-123PREDICTED: probable serine/threonine-protein kinase clkA
STRINGXP_010680727.11e-122(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.17e-33C2H2-like zinc finger protein