PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008379-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 345aa    MW: 37349.7 Da    PI: 6.0052
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008379-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY635e-20169218259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fp        ++C+vkk+vers+edp+vv++tYeg+H h+
  AHYPO_008379-RA 169 EDGYRWRKYGQKAVKNSPFP--------SKCTVKKRVERSSEDPSVVITTYEGQHCHH 218
                      8*******************........5799***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-22153219IPR003657WRKY domain
SuperFamilySSF1182903.66E-19160218IPR003657WRKY domain
PROSITE profilePS5081120.094163220IPR003657WRKY domain
SMARTSM007743.1E-25168219IPR003657WRKY domain
PfamPF031061.7E-14169218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDSDSNKPDP THSSDWSLPP DSASDHVFFL NRDHSHDNHM LSEFPWSYDD SSELSHTHSS  60
LGSPTLADVD DYQPSDDTPI ISQTEGVAAS CSGSQQQESL VGDQISDVIA PNPSASSSSS  120
EDLGDKRVGK SAISTALADT STKVKKKGQK RIRQPRFAFM TKSEVDHLED GYRWRKYGQK  180
AVKNSPFPSK CTVKKRVERS SEDPSVVITT YEGQHCHHTI GFPRSSGFIT HDTAFLGQFA  240
SPLTTSQSSF LYPGIPFSQE TSLLSPIAQA QSQAQAQAQA QAQAMDSVNT VQSLHHHHHQ  300
QAQSHDPIRS DSPASVETTD QQPAAVSSGQ GLLGDIVPPG MRNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-161612171074Probable WRKY transcription factor 4
2lex_A6e-161612171074Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2327041e-33AC232704.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0193P17, complete sequence.
GenBankBT0139331e-33BT013933.1 Lycopersicon esculentum clone 132931F, mRNA sequence.
GenBankHG9755171e-33HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835990.11e-116probable WRKY transcription factor 57
TrEMBLA0A0K9R0R91e-115A0A0K9R0R9_SPIOL; Uncharacterized protein
STRINGXP_010680728.11e-107(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.25e-52WRKY DNA-binding protein 57