PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_008473-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 179aa MW: 19604 Da PI: 9.4528

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_008473-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.8e-38	20	79	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++lkcprC+s+ntkfCyynny+lsqPr++Ck+C+ryWtkGG+lrn+P+Ggg+rk k+ AHYPO_008473-RA 20 EQEQLKCPRCNSNNTKFCYYNNYNLSQPRHYCKNCKRYWTKGGSLRNIPIGGGTRKITKR 79 57899**************************************************97665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57783	8.84E-5	12	61	No hit	No description
ProDom	PD007478	1.0E-26	15	72	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	22	77	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.369	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MQDPSSLLVF PQLKQPEFPE QEQLKCPRCN SNNTKFCYYN NYNLSQPRHY CKNCKRYWTK 60 GGSLRNIPIG GGTRKITKRT SSKQRSSTDP GPGLNLAKPK GSGVMGISMA SEGQFGNMIL 120 EGMSLNGLKT GQDNRSDLDP GLELVHENNG STSEGLILGG GDQSLWNGTN NGYLHTRF*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021774198.1	3e-65	dof zinc finger protein DOF3.1-like
TrEMBL	A0A0K9RHW0	4e-56	A0A0K9RHW0_SPIOL; Uncharacterized protein
STRING	XP_010690053.1	1e-51	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-37	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	AHYPO_008473-RA