PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_008475-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NF-YC

Protein Properties

Length: 134aa MW: 14701.9 Da PI: 6.2629

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_008475-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	62.1	1.1e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ ++ + +fdfl d+v + AHYPO_008475-RA 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDVTLQRGAKTMSSLHLKHCIHSFSMFDFLKDVVSK 86 5789**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.73E-21	3	89	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.5E-27	3	72	IPR009072	Histone-fold
Pfam	PF00808	6.1E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDVTLQRGAK 60 TMSSLHLKHC IHSFSMFDFL KDVVSKVPDY GQSDANADDR SATKRSKKQA MPAAVVEDEA 120 EAEGEVADGE GLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-25	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021851404.1	3e-70	dr1-associated corepressor isoform X1
Swissprot	A0JPP1	1e-31	NC2A_RAT; Dr1-associated corepressor
Swissprot	Q14919	2e-31	NC2A_HUMAN; Dr1-associated corepressor
Swissprot	Q2YDP3	2e-31	NC2A_BOVIN; Dr1-associated corepressor
TrEMBL	A0A0K9RC39	7e-69	A0A0K9RC39_SPIOL; Uncharacterized protein
STRING	XP_010670583.1	4e-68	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-59	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	AHYPO_008475-RA