PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008532-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 311aa    MW: 34425 Da    PI: 4.4084
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008532-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.74.1e-184492149
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k 49
                     l+pGfrFhPtd+elv +yLk+k+ +k++++ ++i+e+diyk+ePwdLp  
  AHYPO_008532-RA 44 LAPGFRFHPTDQELVGYYLKRKICSKPIRF-DAISETDIYKSEPWDLPgF 92
                     579**************************9.99**************932 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-184299IPR003441NAC domain
PROSITE profilePS5100514.98744179IPR003441NAC domain
PfamPF023658.1E-84687IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGTEPPPPPP PPPLPQFSSR LLLPPPPQSP PRLLPPPPET VTSLAPGFRF HPTDQELVGY  60
YLKRKICSKP IRFDAISETD IYKSEPWDLP GFKPGEQYGP FVEEEWEKDG STLVPGLEGD  120
DEAAANDDAR VEDSIHLMNN SEPAAVTSCG FSTEVQEIPP LCKIERAEDG PVACTIDLEP  180
LSLGPNKRFK PSEPETCHSN ILDNSNLVTE RRCSSSSGTT NFSSGLLEFP LLESGEPQKE  240
RPCPLANLID INVPPSCLKL FEDLRNEIYR TSIEKESLKI EVMSARTMIN ILQTKIDHLT  300
KENEDLKKNM *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021722878.11e-116NAC domain-containing protein 2-like
RefseqXP_021761189.11e-116NAC domain-containing protein 2-like
TrEMBLA0A0K9R5V81e-109A0A0K9R5V8_SPIOL; Uncharacterized protein
STRINGXP_010694507.11e-105(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-24NAC domain containing protein 53