PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008586-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 177aa    MW: 19838.3 Da    PI: 4.1175
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008586-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.24e-20663150
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........k 50
                     lppGfrFhPtdeelv +yLk+k++g+k++l e+i+e+d+y++ePw+Lp+          
  AHYPO_008586-RA  6 LPPGFRFHPTDEELVAYYLKRKINGHKIDL-EIIPEIDLYQCEPWELPStlfiilsslL 63
                     79****************************.99**************953555555540 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-20455IPR003441NAC domain
PROSITE profilePS5100517.5986164IPR003441NAC domain
PfamPF023655.6E-10784IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAPVALPPGF RFHPTDEELV AYYLKRKING HKIDLEIIPE IDLYQCEPWE LPSTLFIILS  60
SLLLTFCLPG RLFNLTDDAY ALCRVFKKTA TSISNNIATS SSSQEHTFTN IVQMTSDQSS  120
SIDIYEGRCD DFDTSDYSIP IEICSTTNNP LTHGSSSLCD VGDGQWMQYL NEEEFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-142531162Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021742890.11e-48NAC domain-containing protein 86-like
TrEMBLA0A0J8BD883e-46A0A0J8BD88_BETVU; Uncharacterized protein
STRINGXP_010694972.14e-47(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-26NAC domain containing protein 57