PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008626-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 174aa    MW: 19572.2 Da    PI: 7.6232
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008626-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.51.8e-097342754
              AP2 27 krkrfslgkfgtaeeAakaaiaarkkle 54
                     +++r++lg+f tae+Aa+a+++a++ + 
  AHYPO_008626-RA  7 RKTRIWLGTFETAEDAARAYDEAARLMC 34
                     359*********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.735143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-20343IPR001471AP2/ERF domain
SMARTSM003805.5E-14349IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-13445IPR016177DNA-binding domain
PfamPF008471.4E-5635IPR001471AP2/ERF domain
CDDcd000182.29E-19845No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MARPQQRKTR IWLGTFETAE DAARAYDEAA RLMCGPRART NFPYNPNAPQ TSSSKLLSAT  60
LTAKLHRCYM ASLQITKNSA MQAQQRVLSP QFPGSGTGIS PKFVNSGAWS PDYVPTKVPV  120
LTSPEPNWTM KIENNQFEHE PQQLQLQYTP LEEHHIEQMI EELLHYGSIE ITI*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021739428.14e-91ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW58e-52ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0K9S1F46e-85A0A0K9S1F4_SPIOL; Uncharacterized protein
STRINGXP_010665840.13e-88(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-31ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]