PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008632-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARR-B
Protein Properties Length: 575aa    MW: 64057.4 Da    PI: 6.866
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008632-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.37.1e-28202255155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k r++W+ eLH++Fv av+qL G +kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  AHYPO_008632-RA 202 KSRVVWSVELHRKFVAAVNQL-GLDKAVPKKILELMNVEKLTRENVASHLQKYRL 255
                      68*******************.********************************8 PP
2Response_reg74.24.9e-25201281109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l+k +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +g+ +++ + l+ 
  AHYPO_008632-RA  20 VLAVDDNPTCLRVLETLLKKCQY-HVTTTNQAITALKMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSINGDTKLVMKGLSH 111
                      799********************.***************888888*******************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga  +l Kp+  eel +
  AHYPO_008632-RA 112 GACHYLLKPVRLEELKN 128
                      **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.0E-1611546IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.9E-4117141No hitNo description
SuperFamilySSF521725.55E-3417141IPR011006CheY-like superfamily
SMARTSM004481.9E-2918130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.85819134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2220128IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.68E-2521134No hitNo description
PROSITE profilePS5129411.747199258IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-30199260IPR009057Homeodomain-like
SuperFamilySSF466891.06E-19200259IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-25202255IPR006447Myb domain, plants
PfamPF002491.4E-7204254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MTVEQRKDEP NDQFPVGMRV LAVDDNPTCL RVLETLLKKC QYHVTTTNQA ITALKMLREN  60
KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSING DTKLVMKGLS HGACHYLLKP  120
VRLEELKNIW QHVFRRKTFD SRDRKGSNRL DQDSSDGNGS RSVTFNQDAK LCRKRKDQEQ  180
NMDEDDDHDE NEHETEDVSQ KKSRVVWSVE LHRKFVAAVN QLGLDKAVPK KILELMNVEK  240
LTRENVASHL QKYRLYLKRI SSVANQQANM VAALGGRDAS YLHMNSVNIH GFNSNARFQN  300
IPLRSIPPPG VLARLDTPAG MGLNGIPPSG LVQLDQAQIA TPSLTDFKFR PNLLARDHTK  360
TVLMPISLEY DQLHKNNTVL SGSSDSILSL PNSSLTIQGR SAQDRQSLQG FGASSDAPPN  420
SRDHNRCNSD WPAAVQSQPV PMNPVASITT QNSSLMSENT MQNMSCSIKQ VWDSECLEGL  480
VDSSIGNTHF AYDPRSPNEV SHRNNGFDSM GLPRSDFVTL QNDEVLWNNS GVDMAIKMKR  540
GQIIEQGGRP MGSYTVGNDA GSLEDVVTAM CKHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-23199261264ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665924.10.0PREDICTED: two-component response regulator ORR24 isoform X1
SwissprotA2X1N21e-136ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-136ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0K9QPN00.0A0A0K9QPN0_SPIOL; Two-component response regulator
STRINGXP_010665924.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-125response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]